revbayes compile fail

gistfile1.txt

[ 99%] Building CXX object ui/CMakeFiles/rb-ui.dir/Users/chris/src/revbayes/src/ui/RbClient.cpp.o
In file included from /Users/chris/src/revbayes/src/ui/RbClient.cpp:1:
In file included from /Users/chris/src/revbayes/projects/cmake/../../src/ui/RbClient.h:8:
In file included from /Users/chris/src/revbayes/projects/cmake/../../src/libs/lineedit/EditorMachineObserver.h:11:
In file included from /Users/chris/src/revbayes/projects/cmake/../../src/libs/lineedit/EditorState.h:8:
/Users/chris/src/revbayes/projects/cmake/../../src/libs/lineedit/lineeditUtils.h:35:20: warning: implicit conversion
      from 'const size_type' (aka 'const unsigned long') to 'int' changes value from 18446744073709551615 to -1
      [-Wconstant-conversion]
        int rPos = std::string::npos, _rPos, tmpInt;
            ~~~~   ^~~~~~~~~~~~~~~~~
In file included from /Users/chris/src/revbayes/src/ui/RbClient.cpp:4:
/Users/chris/src/revbayes/projects/cmake/../../src/ui/WorkspaceUtils.h:121:82: error: no member named
      'getNewTypeObject' in 'RevLanguage::Workspace'
        RevLanguage::RevObject *type = RevLanguage::Workspace::globalWorkspace().getNewTypeObject(typeName);
                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
1 warning and 1 error generated.
make[2]: *** [ui/CMakeFiles/rb-ui.dir/Users/chris/src/revbayes/src/ui/RbClient.cpp.o] Error 1
make[1]: *** [ui/CMakeFiles/rb-ui.dir/all] Error 2
make: *** [all] Error 2

Oh, well, that happens because we are still on the development branch and it seems that make was done from the Master branch. Could you change? We will push to Master after the workshop.

Sebastian

How about we merge development into master now, since development is stable and compiles, then merge again and tag that commit on master as release after the workshop?

Michael

Makes sense. I'll compile from development. Thanks!

Compiling from development was fine. I also had to do this:

ln -s ../../boost_1_55_0/stage/lib/*.dylib .

into the projects/cmake directory

because of:

$ otool -L rb
rb:
libboost_filesystem.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_regex.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_program_options.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_system.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_thread.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_context.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_signals.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_date_time.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_iostreams.dylib (compatibility version 0.0.0, current version 0.0.0)
libboost_serialization.dylib (compatibility version 0.0.0, current version 0.0.0)
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 60.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1197.1.1)

And I just noticed that similar instructions are on the NESCent course wiki. Doh. ;-)