Chris Friedline cfriedline

cfriedline / gist:a9fecd6947f3a9bdcacc

Created June 14, 2014 16:14

after godel crash

	-rw-rw-r-- 1 cfriedline cfriedline 462969 Jun 13 16:13 snp_calling.ipynb
	-rw-rw-r-- 1 cfriedline cfriedline 9651811244 Jun 13 16:12 store.h5

cfriedline / gist:42a16abfa4393a364d66

Last active August 29, 2015 14:02

code for IPython ipcluster ssh host list in ipcluster_config.py

	import subprocess
	qhost = subprocess.check_output(["qhost"])
	host_dict = {}
	for elem in qhost.split("\n"):
	if 'godel' in elem:
	data = elem.split()
	host = data[0]
	cpu = int(data[2])
	if cpu > 8:
	host_dict[host] = cpu

cfriedline / Untitled0.ipynb-4.json

Last active August 29, 2015 14:02

	{
	"metadata": {
	"name": "",
	"signature": "sha256:08fbbaacbb2f7ed6a72dbda30b0539a89fe5f1e1bb540c869d19c9976d4feba8"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	"cells": [

cfriedline / test_mp_rpy2.ipynb-3.json

Created June 4, 2014 07:30

	{
	"metadata": {
	"name": "",
	"signature": "sha256:5507a20bf985d7ff9c8b454bf414997a33b671d82b7ceaaf24f89a61d1397ce0"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	"cells": [

cfriedline / test_mp_rpy2.ipynb-2.json

Created June 4, 2014 06:06

	{
	"metadata": {
	"name": "",
	"signature": "sha256:24625e0326d219f8b77f0317e421df165d0adfb7925fac44e4f9cc5c35a28bd6"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	"cells": [

cfriedline / test_mp_rpy2.ipynb.json

Created June 4, 2014 05:08

testing multiprocessing and rpy2 (ape)

	{
	"metadata": {
	"name": "",
	"signature": "sha256:04f733fe38a12e7bbe8ee8d3f2900d3fecf0ae7a83ba728cd84650110e26b216"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	"cells": [

cfriedline / gist:9104739

Last active August 29, 2015 13:56

	rTraitDisc2 <-
	function(phy, model = "ER", k = if (is.matrix(model)) ncol(model) else 2,
	rate = 0.1, states = LETTERS[1:k], freq = rep(1/k, k),
	ancestor = FALSE, root.value = 1, ...)
	{
	if (is.null(phy$edge.length))
	stop("tree has no branch length")
	if (any(phy$edge.length < 0))
	stop("at least one branch length negative")

cfriedline / cegma_blast.ipynb

Created January 24, 2014 16:21

Sorry, something went wrong. Reload?

Sorry, we cannot display this file.

Sorry, this file is invalid so it cannot be displayed.

cfriedline / snp_sim

Created December 4, 2013 16:45

cfriedline / latexify.js

Created November 14, 2013 21:07

Create LaTeX table from selected text in Google Spreadsheet

	function latexify() {
	var app = UiApp.createApplication();
	height = "400"
	width = "500"
	app.setHeight(height)
	app.setWidth(width)
	app.setTitle("LaTeXified!")
	panel = app.createVerticalPanel()
	panel.setHeight("350");
	panel.setWidth(width);