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December 18, 2019 21:00
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githubinstall::gh_search_packages("metabolomics")
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| username | package_name | title | |
|---|---|---|---|
| CarlBrunius | <a href='https://github.com/CarlBrunius/batchCorr'/target='blank'>batchCorr</a> | Within and between batch correction of LC-MS metabolomics data | |
| JustinZZW | <a href='https://github.com/JustinZZW/ZZWtool'/target='blank'>ZZWtool</a> | ZZWtool: common tools in metabolomics data process | |
| PlantDefenseMetabolism | <a href='https://github.com/PlantDefenseMetabolism/MetCirc'/target='blank'>MetCirc</a> | A workflow for metabolomics data in R | |
| PlantDefenseMetabolism | <a href='https://github.com/PlantDefenseMetabolism/MetabolomicTools'/target='blank'>MetabolomicTools</a> | A workflow for metabolomics data in R | |
| Viant-Metabolomics | <a href='https://github.com/Viant-Metabolomics/msPurity'/target='blank'>msPurity</a> | Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics | |
| YonghuiDong | <a href='https://github.com/YonghuiDong/Miso'/target='blank'>Miso</a> | R package for Multi-isotope Labeling for Metabolomics Analysis | |
| afukushima | <a href='https://github.com/afukushima/MSEAp'/target='blank'>MSEAp</a> | Metabolite Set Enrichment Analysis (MSEA) for metabolomics community | |
| b2slab | <a href='https://github.com/b2slab/FELLA'/target='blank'>FELLA</a> | FELLA: an R package for Metabolomics data enrichment through diffusion | |
| barupal | <a href='https://github.com/barupal/ManyStats'/target='blank'>ManyStats</a> | Handy functions for calculating statistics/graphics for complex metabolomics projects with several experimental groups | |
| barupal | <a href='https://github.com/barupal/MetSkye'/target='blank'>MetSkye</a> | R functions for Generating metabolomics data matrices from GC/LC MS data files | |
| caom | <a href='https://github.com/caom/peakOmics'/target='blank'>peakOmics</a> | An R package for LCMS-based metabolomics data analysis and annotation | |
| dengkuistat | <a href='https://github.com/dengkuistat/MSVA'/target='blank'>MSVA</a> | A Novel Approach to Removing Unwanted Variation in Metabolomics Data Based on Surrogate Variable Analysis | |
| dlemas | <a href='https://github.com/dlemas/microbes'/target='blank'>microbes</a> | tools for analyzing microbiome and metabolomics data | |
| ethevenot | <a href='https://github.com/ethevenot/r-w4m2bioc'/target='blank'>r-w4m2bioc</a> | Conversion between the Workflow4metabolomics tabulated format and the ExpressionSet bioconductor class | |
| hcji | <a href='https://github.com/hcji/KPIC2'/target='blank'>KPIC2</a> | KPIC2: An Effective Framework for Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms | |
| jasenfinch | <a href='https://github.com/jasenfinch/MFassign'/target='blank'>MFassign</a> | Molecular formula assignment for high resolution metabolomics | |
| jasenfinch | <a href='https://github.com/jasenfinch/binneR'/target='blank'>binneR</a> | An R package for spectral binning of FIE-HRMS metabolomics data | |
| jasenfinch | <a href='https://github.com/jasenfinch/binneRlyse'/target='blank'>binneRlyse</a> | An R package for spectral binning and accurate m/z extraction for FIE-HRMS metabolomics analyses | |
| jasenfinch | <a href='https://github.com/jasenfinch/hrm'/target='blank'>hrm</a> | Easily install, load and update R packages for high resolution metabolomics analyses | |
| jasenfinch | <a href='https://github.com/jasenfinch/metaboData'/target='blank'>metaboData</a> | An R package containing example metabolomics data sets | |
| jasenfinch | <a href='https://github.com/jasenfinch/metaboReports'/target='blank'>metaboReports</a> | Automated report generation for high resolution metabolomics analyses | |
| jasenfinch | <a href='https://github.com/jasenfinch/metaboVis'/target='blank'>metaboVis</a> | Tools for visualising metabolomics data | |
| jasenfinch | <a href='https://github.com/jasenfinch/metaboWorkflows'/target='blank'>metaboWorkflows</a> | R workflows for metabolomics analyses | |
| jasenfinch | <a href='https://github.com/jasenfinch/metabolyseR'/target='blank'>metabolyseR</a> | Methods for pre-treatment, classification, feature selection and correlation analyses of metabolomics data | |
| jasenfinch | <a href='https://github.com/jasenfinch/profilePro'/target='blank'>profilePro</a> | Wrappers for processing data from metabolomics profiling experiments | |
| jaspershen | <a href='https://github.com/jaspershen/MetCleaning'/target='blank'>MetCleaning</a> | Automatic and integrated tool for data cleaning and statistical analysis of large scale MS-based metabolomics data. | |
| jaspershen | <a href='https://github.com/jaspershen/MetNormalizer'/target='blank'>MetNormalizer</a> | MetNormalizer is used to normalize large scale metabolomics data. | |
| jaspershen | <a href='https://github.com/jaspershen/MetProcesser'/target='blank'>MetProcesser</a> | MetProcesser is used to process large scale MS based metabolomics data. | |
| jcapelladesto | <a href='https://github.com/jcapelladesto/geoRge'/target='blank'>geoRge</a> | geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics | |
| libcell | <a href='https://github.com/libcell/FeatureSelectionR'/target='blank'>FeatureSelectionR</a> | A new Package used for feature selection in metabolomics | |
| pietrofranceschi | <a href='https://github.com/pietrofranceschi/Metabodemo'/target='blank'>Metabodemo</a> | Demo for the EBI metabolomics course | |
| rmflight | <a href='https://github.com/rmflight/metabolomicsUtilities'/target='blank'>metabolomicsUtilities</a> | useful utilities in processing metabolomics data | |
| rwehrens | <a href='https://github.com/rwehrens/BatchCorrMetabolomics'/target='blank'>BatchCorrMetabolomics</a> | Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, 2016. | |
| rwehrens | <a href='https://github.com/rwehrens/metaMS'/target='blank'>metaMS</a> | data processing for MS-based metabolomics | |
| slfan2013 | <a href='https://github.com/slfan2013/SERRF'/target='blank'>SERRF</a> | Systematic Error Removal using Random Forest (SERRF) for large-scale untargeted metabolomics | |
| stanstrup | <a href='https://github.com/stanstrup/mwtabR'/target='blank'>mwtabR</a> | Parser for mwtab files from the metabolomicsworkbench | |
| wilsontom | <a href='https://github.com/wilsontom/FIEtools'/target='blank'>FIEtools</a> | Tools for Flow Infusion Electrospray Ionisation (FIE) Mass Spectrometry (MS) metabolomics data | |
| wilsontom | <a href='https://github.com/wilsontom/LCPRO'/target='blank'>LCPRO</a> | Processing and analysis of LCMS metabolomics data | |
| wilsontom | <a href='https://github.com/wilsontom/metProc'/target='blank'>metProc</a> | Functions for pre-processing metabolomics data sets | |
| wilsontom | <a href='https://github.com/wilsontom/metproc'/target='blank'>metproc</a> | helpers for pre-processing metabolomics data sets | |
| wilsontom | <a href='https://github.com/wilsontom/multinome'/target='blank'>multinome</a> | Wrappers and functions for analysis of non-targeted metabolomics data | |
| wjurkowski | <a href='https://github.com/wjurkowski/ONION'/target='blank'>ONION</a> | Network based integration of transcriptomics and metabolomics data | |
| yiluheihei | <a href='https://github.com/yiluheihei/microbes'/target='blank'>microbes</a> | Tools for analyzing microbiome and metabolomics data |
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