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---
title: "ggiraph with bar chart tooltips"
author: "hrbrmstr"
date: "`r Sys.Date()`"
output:
  html_document:
    css: ggiraphe.css
---
The full `Rmd` and `css` files for this are in <a target=_blank href="https://gist.github.com/hrbrmstr/5ee3123f7161580d4cdf">this gist</a>.

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ggroc <- function(roc, showAUC = TRUE, interval = 0.2, breaks = seq(0, 1, interval)){
  require(pROC)
  if(class(roc) != "roc")
    simpleError("Please provide roc object from pROC package")
  plotx <- rev(roc$specificities)
  ploty <- rev(roc$sensitivities)
  
  ggplot(NULL, aes(x = plotx, y = ploty)) +
    geom_segment(aes(x = 0, y = 1, xend = 1,yend = 0), alpha = 0.5) + 
    geom_step() +

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Project Title

One Paragraph of project description goes here

Getting Started

These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. See deployment for notes on how to deploy the project on a live system.

Prerequisites

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List of Ways to Help Get New Contributors

Ideas

(Sorted by # of people who voted for each one)

• Say "Thank You" / Acknowledgement (8)
• Have website (but website can be a distraction) (8)
• "Setup social spaces" (8)
• Good First Issue (7)
• Status / Recognize status. A way to show/document that someone is a maintainer vs a collaborator (7)
• Have a fast build (6)

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FILE SPACING:

 # double space a file
 sed G

 # double space a file which already has blank lines in it. Output file
 # should contain no more than one blank line between lines of text.
 sed '/^$/d;G'

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People

:bowtie:	😄 :smile:	😆 :laughing:
😊 :blush:	😃 :smiley:	☺️ :relaxed:
😏 :smirk:	😍 :heart_eyes:	😘 :kissing_heart:
😚 :kissing_closed_eyes:	😳 :flushed:	😌 :relieved:
😆 :satisfied:	😁 :grin:	😉 :wink:
😜 :stuck_out_tongue_winking_eye:	😝 :stuck_out_tongue_closed_eyes:	😀 :grinning:
😗 :kissing:	😙 :kissing_smiling_eyes:	😛 :stuck_out_tongue:

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#' Create a Kaplan-Meier plot using ggplot2
#'
#' @param sfit: a survfit object
#' @param table: logical: Create a table graphic below the K-M plot, indicating at-risk numbers?
#' @param returns logical: if TRUE, return an arrangeGrob object
#' @param xlabs: x-axis label
#' @param ylabs: y-axis label
#' @param ystratalabs: The strata labels. Default = levels(summary(sfit)$strata)
#' @param ystrataname: The legend name. Default = "Strata"
#' @param timeby numeric: control the granularity along the time-axis

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#!/bin/bash

# SCRIPT USAGE:
# bash plink_pruning_prep.sh filtered_snp_file.vcf

# REQUIREMENTS:
# This script uses several software packages, all available from [Bioconda channel](https://bioconda.github.io/).
# They can be installed with simple:
# conda install tabix bcftools plink

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# print everything after loop is finished
for (i in 0:101) {
  print(i)
  Sys.sleep(0.01)
}

# simplist way to print within loop
for (i in 0:101) {
  print(i)
  Sys.sleep(0.01)

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import papermill as pm

pm.execute_notebook('weather_forecast_using_pyowm.ipynb',
                    'weather_forecast_using_pyowm_output.ipynb',
                    parameters={'city':'Sao Paulo,BR'},
                    kernel_name='papermill-tutorial')