Cromwell configuration generated by bcbio for http inputs

bcbio-cromwell-http.conf

include required(classpath("application"))

system {
  workflow-restart = true
}
call-caching {
  enabled = true
}
load-control {
  # Avoid watching memory, since the load-controller stops jobs on local runs
  memory-threshold-in-mb = 1
}

cwltool-runner {
  # Use external cwltool to avoid slow runtimes with java embedded pre-processing
  class = "cwl.CwltoolProcess"
}


database {
  profile = "slick.jdbc.HsqldbProfile$"
  db {
    driver = "org.hsqldb.jdbcDriver"
    url = "jdbc:hsqldb:file:/home/chapmanb/drive/work/cwl/test_bcbio_cwl/gcp/cromwell_work/persist/metadata;shutdown=false;hsqldb.tx=mvcc"
    connectionTimeout = 200000
  }
}


engine {
  filesystems {
    http {}
  }
}


backend {
  providers {
    Local {
      config {
        concurrent-job-limit = 1
        runtime-attributes = """
        Int? cpu
        Int? memory_mb
        
        Int? cpuMin
        Int? cpuMax
        Int? memoryMin
        Int? memoryMax
        String? outDirMin
        String? outDirMax
        String? tmpDirMin
        String? tmpDirMax
        """
        submit-docker: ""
             filesystems {

        http { }
        }

      }
    }

  }
}