Last active
March 4, 2017 11:33
-
-
Save chapmanb/765ec9ae28a0233856547dd300b3a8a4 to your computer and use it in GitHub Desktop.
NA12878 exome validation; GiaB 3.3.2
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| genome | resource | version | |
|---|---|---|---|
| GRCh37 | GA4GH_problem_regions | 20160916 | |
| GRCh37 | MIG | 20150730 | |
| GRCh37 | prioritize | 20160215 | |
| GRCh37 | dbsnp | 147-20160408 | |
| GRCh37 | hapmap | 3.3 | |
| GRCh37 | 1000g_omni_snps | 2.5 | |
| GRCh37 | ACMG56_genes | 20160810 | |
| GRCh37 | 1000g_snps | 2.8 | |
| GRCh37 | mills_indels | 2.8 | |
| GRCh37 | clinvar | 20160502 | |
| GRCh37 | cosmic | 68 | |
| GRCh37 | ancestral | 20141010 | |
| GRCh37 | qsignature | 20140703 | |
| GRCh37 | transcripts | 2015-12-01 | |
| GRCh37 | RADAR-GRCh37 | 4 | |
| GRCh37 | giab-NA12878 | v3_3_2 | |
| GRCh37 | giab-NA24385 | v3_3_2-sv_v0.1.8 | |
| GRCh37 | giab-NA24631 | v3_3_2 | |
| GRCh37 | dream-syn3 | 2014-08-04 | |
| GRCh37 | dream-syn4 | 2016-06-11 | |
| GRCh37 | srnaseq | 20170107 | |
| GRCh37 | capture_regions | 20161202 | |
| GRCh37 | genesplicer | 2004.04.03 | |
| GRCh37 | effects_transcript | 2017-02-22 | |
| GRCh37 | dbnsfp | 3.3a | |
| GRCh37 | vcfanno | 20170105 | |
| GRCh37 | RADAR | 5 | |
| GRCh37 | viral | 2017.02.04 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| bamtools | 2.4.0 | |
|---|---|---|
| bcbio-nextgen | 1.0.2a0-ec2fe87 | |
| bcbio-variation | 0.2.6 | |
| bcftools | 1.3 | |
| bedtools | 2.24.0 | |
| biobambam | 2.0.62 | |
| bioconductor-bubbletree | 2.1.5 | |
| bowtie2 | 2.2.8 | |
| bwa | 0.7.15 | |
| chanjo | ||
| cnvkit | 0.8.5dev0 | |
| cufflinks | 2.2.1 | |
| cutadapt | 1.12 | |
| fastqc | 0.11.5 | |
| featurecounts | 1.4.4 | |
| freebayes | 1.1.0 | |
| gatk | 3.7 | |
| gatk-framework | 3.6.24 | |
| gemini | 0.19.2a | |
| grabix | 0.1.8 | |
| hisat2 | 2.0.5 | |
| htseq | 0.6.1.post1 | |
| lumpy-sv | 0.2.12 | |
| manta | 1.0.3 | |
| metasv | 0.4.0 | |
| mirdeep2 | 2.0.0.7 | |
| mutect | 1.1.5 | |
| novoalign | 3.07.00 | |
| novosort | V3.00.02 | |
| oncofuse | 1.1.0 | |
| phylowgs | 20150714 | |
| picard | 2.9.0 | |
| platypus-variant | 0.8.1 | |
| qualimap | 2.2.2a | |
| rna-star | ||
| rtg-tools | 3.7.1 | |
| sailfish | 0.10.1 | |
| salmon | 0.8.0 | |
| sambamba | 0.6.5 | |
| samblaster | 0.1.24 | |
| samtools | 1.3.1 | |
| scalpel | 0.5.1 | |
| seqbuster | 3.1 | |
| snpeff | 4.3g | |
| vardict | 2017.02.16 | |
| vardict-java | 1.4.10 | |
| variant-effect-predictor | 87 | |
| varscan | 2.4.2 | |
| vcflib | 1.0.0_rc1 | |
| vt | 2015.11.10 | |
| wham | 1.7.0.307 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment