Created
September 13, 2021 16:19
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| [Main] | |
| seed=632741178 | |
| phase=0 | |
| max_processors=24 | |
| dataset_id=RL | |
| output_directory=out | |
| temp_directory=/tmp | |
| gsa=True | |
| pooled_gsa=True | |
| anonymous=True | |
| compress=1 | |
| [ReadSimulator] | |
| readsim=tools/art_illumina-2.3.6/art_illumina | |
| error_profiles=tools/art_illumina-2.3.6/profiles | |
| samtools=tools/samtools-1.3/samtools | |
| profile=mbarc | |
| size=0.1 | |
| type=art | |
| fragments_size_mean=270 | |
| fragment_size_standard_deviation=27 | |
| [CommunityDesign] | |
| #distribution_file_paths='out/abundance0.tsv', 'out/abundance1.tsv', 'out/abundance2.tsv', 'out/abundance3.tsv', 'out/abundance4.tsv', 'out/abundance5.tsv', 'out/abundance6.tsv', 'out/abundance7.tsv', 'out/abundance8.tsv', 'out/abundance9.tsv' | |
| ncbi_taxdump=tools/ncbi-taxonomy_20170222.tar.gz | |
| strain_simulation_template=scripts/StrainSimulationWrapper/sgEvolver/simulation_dir | |
| number_of_samples=1 | |
| [community0] | |
| metadata=defaults/metadata.tsv | |
| id_to_genome_file=defaults/genome_to_id.tsv | |
| id_to_gff_file= | |
| genomes_total=2 | |
| genomes_real=2 | |
| max_strains_per_otu=1 | |
| ratio=1 | |
| mode=differential | |
| log_mu=1 | |
| log_sigma=2 | |
| gauss_mu=1 | |
| gauss_sigma=1 | |
| view=False |
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