Created
January 28, 2021 14:21
-
-
Save chasemc/17bae3db854af27a491bf1c57ae957bf to your computer and use it in GitHub Desktop.
Get CDS IDs from all antismash genbank files in all subdirectories
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
find -name "*region*gbk" | xargs grep "CDS " -A3 | grep "/ID=" | cut -d'"' -f2 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment