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hmmsearch a model with --cut_ga when the model has no defined cutoffs
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hmmsearch --domtblout "a.dom" -Z 100 --cut_ga '/socialgene_nr_hmms_file_without_cutoffs_1_of_1.hmm' /example.fa | |
# hmmsearch :: search profile(s) against a sequence database | |
# HMMER 3.3.2 (Nov 2020); http://hmmer.org/ | |
# Copyright (C) 2020 Howard Hughes Medical Institute. | |
# Freely distributed under the BSD open source license. | |
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# query HMM file: /socialgene_nr_hmms_file_without_cutoffs_1_of_1.hmm | |
# target sequence database: /example.fa | |
# per-dom hits tabular output: a.dom | |
# model-specific thresholding: GA cutoffs | |
# sequence search space set to: 100 | |
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Query: DLq3VAeNtnYBFERw4zkJh1S_KMGoVfs5 [M=97] | |
Error: GA bit thresholds unavailable on model DLq3VAeNtnYBFERw4zkJh1S_KMGoVfs5 |
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