Chase Clark chasemc

Computation and Informatics in Biology and Medicine (CIBM) Postdoc http://www.cibm.wisc.edu/

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chasemc / _run.sh

Created January 24, 2021 19:14 — forked from jexp/_run.sh

Rendering large graphs with vivagraph.js, neo4j-javscript-driver (binary-bolt), meetup dataset and compiled runtime. Oh the joy :)

	npm install neo4j-driver

	node test-neo-driver.js

chasemc / Abbreviate Journal Names in Bibtex Database.py

Created August 3, 2020 03:26 — forked from trevismd/Abbreviate Journal Names in Bibtex Database.py

Using the translation table from the Jabref program, finds and replaces all scientific journal names to their standardized abbreviated form. First argument is the file to be processed; outputs safely to 'abbreviated.bib'

	#!/usr/bin/env python
	#-- coding: utf-8 --
	# Supporting Python 3 and JabRef csv file

	import os
	import re
	import sys

	try:
	bibtexdb = open(sys.argv[1]).read()

chasemc / shiny-oauth.r

Created June 30, 2020 13:34 — forked from hadley/shiny-oauth.r

Sketch of shiny + oauth

	library(shiny)
	library(httr)

	# OAuth setup --------------------------------------------------------

	# Most OAuth applications require that you redirect to a fixed and known
	# set of URLs. Many only allow you to redirect to a single URL: if this
	# is the case for, you'll need to create an app for testing with a localhost
	# url, and an app for your deployed app.