Fresh Regolith install

fresh_install.sh

#!/bin/bash
set -e

# ===================== USER CONFIGURATION ===================== #
# location where github repositories of the apps will be downloaded to
export GITHUB_DIR="$HOME/repos/github"

# Whether install GIS related packages such netcdf and paraview
GIS=true
if [[ $GIS == 'true' ]]; then
    # major and minor versions of paraview can be found in https://www.paraview.org/download
    # the dropdown menu is the major version and the minor version can be found
    # from the file name such as 2 or 0-RC1
    export paraview_major_version='5.6'
    export paraview_minor_version='2'
fi
# ============================================================== #
# location where apps will be installed
export APP_DIR="$HOME/.local/apps"

# make the required directories
mkdir -p ${APP_DIR}
mkdir -p ${GITHUB_DIR}
mkdir -p ~/.local/share/applications
mkdir -p ~/.local/bin

# ============================================================== #
# function for getting latest release from a git repo
git_latest(){
    repo=$1
    asset=$2
    URL=$( curl -s "https://api.github.com/repos/${repo}/releases/latest" | jq -r ".assets[$asset] | .browser_download_url" ) && \
    curl -LO "$URL" && \
    echo "$(basename $URL)"
}
# ============================================================== #
# remove all GTK window buttons (close etc.)
gsettings set org.gnome.desktop.wm.preferences button-layout :

# install some essential apps
sudo apt install -y apt-transport-https ca-certificates curl gnupg-agent pkg-config && \

# add gimp ppa
sudo add-apt-repository -yn ppa:otto-kesselgulasch/gimp && \

# add uget ppa
sudo add-apt-repository -yn ppa:uget-team/ppa && \
sudo add-apt-repository -yn ppa:plushuang-tw/uget-stable && \

# add git-lfs ppa
curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | sudo bash && \

# add lazygit
sudo add-apt-repository -yn ppa:lazygit-team/release && \

# add rawtherapee
sudo add-apt-repository -yn ppa:dhor/myway && \

# add texstudio
sudo add-apt-repository -yn ppa:sunderme/texstudio && \

# add go
sudo add-apt-repository -yn ppa:longsleep/golang-backports && \

# install essentials
sudo apt update && \
sudo apt full-upgrade -y && \
sudo apt install -y \
gfortran cmake cmake-data build-essential valgrind valgrind-mpi perl-tk tcl-dev tk-dev openmpi-bin libopenmpi-dev golang-go libssl-dev libfltk1.3-dev liboce-ocaf-dev oce-draw libffi-dev \
asciidoc autoconf automake ccache libpam0g-dev xdotool libncurses-dev libncursesw5-dev libreadline-dev libxcb-render0-dev libutempter-dev libevent-dev bison libboost-all-dev dialog gv at xdg-utils libxrandr-dev \
git git-lfs lazygit darcs \
python-dev python3-dev libpython-dev libpython3-dev python3-smbc python3-gpg python3-pip python-cffi \
doxygen graphviz dot2tex zathura zathura-djvu zathura-ps zathura-pdf-poppler zathura-cb texlive-full texstudio qpdf gnuplot wmctrl python3-pybtex \
vlc vlc-plugin-skins2 vlc-plugin-video-splitter vlc-plugin-vlsub \
gimp-gmic gimp-data-extras gimp-python gimp-help-en ffmpeg imagemagick inkscape inkscape-open-symbols rawtherapee \
xclip htop neofetch exfat-fuse exfat-utils jq global samba exuberant-ctags zsh p7zip-full p7zip-rar unrar uget aria2 uget-integrator trash-cli feh calcurse \
bc neomutt isync msmtp pass w3m notmuch libnotify-bin mailsync abook urlview && \

# config dotfiles
mkdir -p ~/.config/regolith/i3 && \
git clone https://github.com/cheginit/dotfiles.git ~/.dotfiles && \
cd ~/.dotfiles && \
sudo cp -r fonts/* /usr/share/fonts/ && \

for f in $(ls .{zshrc,Xresources-regolith}); do \
  rm -rf ~/$f && \
  ln -s $(readlink -f $f) ~/;
done

for f in $(ls -d .config/*); do \
    rm -rf ~/$f && \
    ln -s $(readlink -f $f) ~/.config/;
done

ln -s $(readlink -f bin/*) ~/.local/bin && \

rm -rf ~/.Xresources.d && \
ln -s $(readlink -f .Xresources.d) ~/ && \

xrdb -merge ~/.Xresources-regolith

# install polybar and jsoncpp
sudo apt install -y \
python3-sphinx libcairo2-dev libxcb1-dev libxcb-util0-dev libxcb-randr0-dev \
libxcb-composite0-dev python-xcbgen xcb-proto libxcb-image0-dev libxcb-ewmh-dev \
libxcb-icccm4-dev libxcb-xkb-dev libxcb-xrm-dev libxcb-cursor-dev libasound2-dev \
libpulse-dev libmpdclient-dev libcurl4-openssl-dev libnl-genl-3-dev && \

cd ${GITHUB_DIR} && \
git clone https://github.com/open-source-parsers/jsoncpp.git && \
cd jsoncpp && \
mkdir build && \
cd build && \
cmake .. && \
sudo make -j4 install && \

cd ${GITHUB_DIR} && \
git clone --recursive https://github.com/polybar/polybar && \
cd polybar && \
mkdir build && \
cd build && \
cmake .. && \
sudo make -j4 install

# install dunst
sudo apt install -y \
libgdk-pixbuf2.0-dev libxinerama-dev \
librust-pangocairo-dev libdbus-1-dev && \
cd ${GITHUB_DIR} && \
git clone https://github.com/dunst-project/dunst.git && \
cd dunst && \
make && \
sudo make install && \
gsettings set org.gnome.gnome-flashback notifications false

# install ack
ver="$(curl -s "https://beyondgrep.com/changes.txt" | sed -n '4p' | awk -F' ' ' {print $1}')"
curl https://beyondgrep.com/ack-${ver} > ~/.local/bin/ack && chmod 0755 ~/.local/bin/ack

# install tlp if on a laptop
[[ ! -z $(upower -i `upower -e | grep 'BAT'`) ]] && \
sudo add-apt-repository -y ppa:linrunner/tlp && \
sudo apt install -y tlp tlp-rdw solaar && \
sudo tlp start

# some apps are only available on ubuntu disco
if (( $(echo "$(lsb_release -r --short) > 19" |bc -l) )); then \
    vga="$(lspci -nn |egrep "VGA|Display" | grep -o Intel)" && \
    if [[ "$vga" == "Intel" ]]; then \
        sudo apt install -y intel-media-va-driver-non-free mesa-vdpau-drivers; \
    fi; \
fi

# install some snap apps
command -v snap >/dev/null 2>&1 && \
sudo snap install blender --classic && \
sudo snap install slack --classic && \
sudo snap install spotify && \
sudo snap install telegram-desktop

# install docker
sudo apt purge -y docker docker-engine docker.io containerd runc
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add - && \
sudo add-apt-repository -y \
  "deb [arch=amd64] https://download.docker.com/linux/ubuntu \
  $(lsb_release -cs) \
  stable" && \
sudo apt install -y docker-ce docker-ce-cli containerd.io && \
sudo groupadd docker && \
sudo usermod -aG docker $USER && \
sudo systemctl enable docker

# install skype
wget https://repo.skype.com/latest/skypeforlinux-64.deb && \
sudo dpkg -i skypeforlinux-64.deb && \
rm skypeforlinux-64.deb

# install dropbox
fname=$( curl -s "https://linux.dropbox.com/packages/ubuntu/" | grep href=\"dropbox | grep amd64.deb | tail -1 | awk -F ">" '{ print $2 }' | awk -F "<" '{ print $1 }' ) && \
curl -LO "https://linux.dropbox.com/packages/ubuntu/$fname" && \
sudo dpkg -i $fname && \
rm $fname

# install chrome
wget https://dl.google.com/linux/direct/google-chrome-stable_current_amd64.deb && \
sudo dpkg -i google-chrome-stable_current_amd64.deb && \
rm google-chrome-stable_current_amd64.deb

# install PDFStudioViewer
wget https://download.qoppa.com/pdfstudioviewer/PDFStudioViewer_linux64.deb && \
sudo dpkg -i PDFStudioViewer_linux64.deb && \
rm PDFStudioViewer_linux64.deb

# install foliate
name="$( git_latest 'johnfactotum/foliate' 0 )" && \
sudo dpkg -i ${name} && \
rm $name

# install playerctl
name="$( git_latest 'altdesktop/playerctl' 3 )" && \
sudo dpkg -i ${name} && \
rm $name

# install flameshot
name="$( git_latest 'lupoDharkael/flameshot' 0 )" && \
sudo dpkg -i ${name} && \
rm $name

# install etcher
name="$( git_latest 'balena-io/etcher' 4 )" && \
sudo dpkg -i ${name} && \
rm $name

# install pandoc
name="$( git_latest 'jgm/pandoc' 0 )" && \
sudo dpkg -i ${name} && \
rm $name

# install spotify from terminal
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh && \
cd ${GITHUB_DIR} && \
git clone https://github.com/Spotifyd/spotifyd.git && \
cd spotifyd && \
cargo build --release && \
mkdir -p ~/.config/systemd/user/ && \
ln -s $(readlink -f contrib/spotifyd.service) ~/.config/systemd/user/ && \
systemctl --user enable spotifyd.service && \
systemctl --user start spotifyd.service && \
cargo install spotify-tui

sudo apt install -f -y && \
sudo apt autoremove -y && \
sudo apt autoclean -y

# install zotero
wget -O zotero.tar.bz2 'https://www.zotero.org/download/client/dl?channel=release&platform=linux-x86_64&version=5.0.76' && \
tar xvf zotero.tar.bz2 -C ${APP_DIR}/ && \
ln -s ${APP_DIR}/Zotero_linux-x86_64/zotero.desktop ~/.local/share/applications/zotero.desktop

# install miniconda
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
chmod +x Miniconda3-latest-Linux-x86_64.sh && \
bash ./Miniconda3-latest-Linux-x86_64.sh -b -p ${APP_DIR}/miniconda && \
rm -f Miniconda3-latest-Linux-x86_64.sh

# install pam-gnupg
cd ${GITHUB_DIR} && \
git clone https://github.com/cruegge/pam-gnupg.git && \
cd pam-gnupg && \
./autogen.sh && \
./configure && \
make && \
sudo make install

# compile and install neovim from source
sudo apt-get install ninja-build gettext libtool libtool-bin && \
sudo apt purge -y vim vim-runtime gvim && \
cd ${GITHUB_DIR} && \
git clone https://github.com/neovim/neovim.git && \
cd neovim && \
make -j4 CMAKE_BUILD_TYPE=Release && \
sudo make install

# install nvim plugins
nvim +'PlugInstall --sync' +qa && \

# Add some latext related repos
cd ${GITHUB_DIR} && \
git clone https://github.com/gillescastel/latex-snippets.git && \
cd latex-snippets && \
ln -s $(readlink -f tex.snippets ) ~/.vim/plugged/ultisnips

cd ${GITHUB_DIR} && \
git clone https://github.com/jleightcap/LaTeX-Templates.git

# install n then lts version of nodejs and npm
cd ${GITHUB_DIR} && \
rm -rf n && \
git clone https://github.com/tj/n.git && \
cd n && \
PREFIX=${APP_DIR}/n make install && \
export N_PREFIX="${APP_DIR}/n" && \
${N_PREFIX}/bin/n lts

# install mutt-wizard
cd ${GITHUB_DIR} && \
rm -rf mutt-wizard && \
git clone https://github.com/LukeSmithxyz/mutt-wizard && \
cd mutt-wizard && \
sudo make install

# install tmux from source
cd ${GITHUB_DIR} && \
rm -rf tmux && \
git clone https://github.com/tmux/tmux.git && \
cd tmux && \
sh autogen.sh && \
./configure --enable-utempter && \
sudo make install

# config tmux
cd && \
git clone https://github.com/gpakosz/.tmux.git && \
ln -s -f .tmux/.tmux.conf && \
cp .tmux/.tmux.conf.local .

# install zsh plugins
cd ${GITHUB_DIR} && \
git clone https://github.com/wbingli/zsh-wakatime.git && \
git clone https://github.com/zsh-users/zsh-syntax-highlighting.git && \

# make pip3 the default pip
sudo ln -s /usr/bin/pip3 /usr/bin/pip

# install some useful python libraries
pip3 install --user -U \
matplotlib numpy yapf flake8 inkscape-figures \
wakatime pybind11 thefuck grip blacktex betterbib \
fortran-linter pynvim pywal pytype flashfocus

# install gomatrix, lf
go get -u github.com/GeertJohan/gomatrix
go get -u github.com/gokcehan/lf

# setup fzf
cd ~/.fzf && \
./install --key-bindings --completion --no-update-rc --no-bash

if [[ $GIS == 'true' ]]; then
    # add qgis
    wget -O - https://qgis.org/downloads/qgis-$(date +'%Y').gpg.key | gpg --import && \
    gpg --export --armor 51F523511C7028C3 | sudo apt-key add - && \
    sudo add-apt-repository -s -y "deb https://qgis.org/debian $(lsb_release -c | cut -f2) main" && \

    sudo apt install -y \
    libnetcdf-c++4-dev libnetcdff-dev libnetcdf-dev nco libhdf5-dev libhdf5-openmpi-dev \
    pnetcdf-bin libpnetcdf-dev netcdf-bin qgis python-qgis libboost-dev liblapack-dev libblas-dev \
    libcoarrays-dev libfftw3-dev qt5-qmake qt5-qmake-bin flex freeglut3-dev libosmesa6-dev libglew-dev swig \
    gsl-bin libgsl-dev swig  libglfw3 libglfw3-dev libfreetype6-dev smpeg-plaympeg gifsicle pstoedit \
    libudunits2-dev libxml2-dev libgdal-dev r-base-dev r-cran-devtools r-cran-roxygen2 && \

    if (( $(echo "$(lsb_release -r --short) > 19" |bc -l) )); then
      sudo apt install -y libnetcdf-pnetcdf-dev
    fi

    # install paraview
    fname="ParaView-${paraview_major_version}.${paraview_minor_version}-MPI-Linux-64bit" && \
    wget -O paraview.tar.gz "https://www.paraview.org/paraview-downloads/download.php?submit=Download&version=v${paraview_major_version}&type=binary&os=Linux&downloadFile=${fname}.tar.gz" && \
    tar xvf paraview.tar.gz -C ${APP_DIR} && \
    mv ${APP_DIR}/$fname ${APP_DIR}/paraview && \
    cp ~/.dotfiles/applications/paraview.desktop ${APP_DIR}/paraview/share/applications && \
    ln -s ${APP_DIR}/paraview/share/applications/paraview.desktop ~/.local/share/applications && \
    rm paraview.tar.gz
    
    # install mmg for meshing
    sudo apt install -y libscotch-dev &&
    cd ${GITHUB_DIR} && \
    git clone https://github.com/MmgTools/mmg.git && \
    mkdir mmg/build && \
    cd mmg/build && \
    cmake .. \
    -DCMAKE_BUILD_TYPE=Release \
    -DCMAKE_CXX_FLAGS="-O3"    \
    -DCMAKE_C_FLAGS="-O3"      \
    -DUSE_SCOTCH=ON && \
    make -j4 && \
    sudo make install
fi

# install some fonts

cd && \
mkdir fonts && \
cd fonts

fonts=("IBM+Plex+Mono" "IBM+Plex+Sans" "IBM+Plex+Sans+Condensed" "IBM+Plex+Serif" "Lato" "Source+Code+Pro" "Cormorant%20Garamond" "EB%20Garamond")

for f in ${fonts[@]}; do \
  curl -Lo font.zip "https://fonts.google.com/download?family=$f" && \
  unzip font.zip -d ${f//+/_} && \
  rm font.zip; \
done

wget https://raw.githubusercontent.com/google/material-design-icons/master/iconfont/MaterialIcons-Regular.ttf && \
fonts+=( materialdesignicons-webfont.ttf ) && \

name="$( git_latest 'microsoft/cascadia-code' 0 )" && \
fonts+=( $name ) && \

name="$( git_latest 'FortAwesome/Font-Awesome' 0 )" && \
unzip -j $name "$(basename ${name%.*})/otfs/*" -d FontAwesome && \
rm -rf $name
fonts+=( FontAwesome ) && \

name="$( git_latest 'belluzj/fantasque-sans' 6 )" && \
tar xvf $name TTF && \
mv TTF FantasqueSansMono && \
rm -rf $name && \
fonts+=( FantasqueSansMono ) && \

url="$(curl -s "https://api.github.com/repos/ryanoasis/nerd-fonts/releases/latest" | jq -r ".assets[0] | .browser_download_url")"
wget "$(dirname "$url")/FiraCode.zip" && \
unzip FiraCode.zip -d FiraCode
fonts+=( FiraCode ) && \

for f in ${fonts[@]}; do \
  font=${f//+/_}
  sudo mv $font /usr/share/fonts/ && \
  sudo chmod --reference=/usr/share/fonts/opentype /usr/share/fonts/$font; \
done

sudo fc-cache -fv
cd ..
rm -rf fonts