Created
September 20, 2012 16:51
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OMERO plate attribute update example in Python
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# | |
# To be run in OMERO CLI shell as follows: | |
# | |
# # Download script to current working directory | |
# omero shell --login | |
# ... | |
# %run -i edit_plate.py plate_id attribute value | |
# | |
import sys | |
from omero.gateway import omero_type | |
try: | |
plate_id, attribute, value = sys.argv[1:] | |
except ValueError: | |
print "Usage: %s <plate_id> <attribute> <value>" | |
sys.exit(1) | |
plate_id = long(plate_id) | |
session = client.getSession() | |
iquery = session.getQueryService() | |
iupdate = session.getUpdateService() | |
plate = iquery.find('Plate', plate_id) | |
if not hasattr(plate, attribute): | |
print 'Plate has no attribute %r' % (attribute) | |
sys.exit(1) | |
setattr(plate, attribute, omero_type(value)) | |
iupdate.saveObject(plate) | |
print 'Successfully set attribute %r of Plate:%d to %r' % \ | |
(attribute, plate_id, value) |
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