Print out important CellProfiler Python module versions

pymoduleversions.py

# -*- coding: utf-8 -*-
#
# Copyright (c) 2018 Glencoe Software, Inc. All rights reserved.
#
# This program and the accompanying materials
# are licensed and made available under the terms and conditions of the BSD
# License which accompanies this distribution.  The full text of the license
# may be found at http://opensource.org/licenses/bsd-license.php
#
# THE PROGRAM IS DISTRIBUTED UNDER THE BSD LICENSE ON AN "AS IS" BASIS,
# WITHOUT WARRANTIES OR REPRESENTATIONS OF ANY KIND, EITHER EXPRESS OR
# IMPLIED.
#

"""
PyModuleVersions
================

**PyModuleVersions** prints out important CellProfiler Python module versions.

"""

import inspect
import sys

import MySQLdb
import bioformats
import centrosome.filter
import centrosome.neighmovetrack
import docutils
import h5py
import inflect
import javabridge
#import joblib
import mahotas
import matplotlib
import numpy
import prokaryote
import raven
import requests
import scipy
import skimage
import sklearn
import zmq

import cellprofiler
import cellprofiler.module
import cellprofiler.setting


"""
    v3.0.0 tag...

    install_requires=[
        "centrosome",
        "docutils",
        "h5py",
        "inflect",
        "javabridge",
        "joblib",
        "mahotas",
        "matplotlib",
        "MySQL-python",
        "numpy",
        "prokaryote==2.3.1",
        "python-bioformats==1.3.1",
        "pyzmq==15.3.0",
        "raven",
        "requests",
        "scikit-image",
        "scikit-learn",
        "scipy"
    ],
"""


class PyModuleVersions(cellprofiler.module.Module):
    category = "File Processing"

    module_name = "PyModuleVersions"

    variable_revision_number = 1

    def create_settings(self):
        self.blarg = cellprofiler.setting.Text(
            'Blarg', 'Blarg', doc='Blarg, blarg, blarg'
        )

    def display(self, workspace, figure):
        pass

    def run(self, workspace):
        print 'cellprofiler: %s' % cellprofiler.__version__

        print 'centrosome: %s' % '~1.0.8'
        print 'docutils: %s' % docutils.__version__
        print 'h5py: %s' % h5py.__version__
        print 'inflect: %s' % inflect.__version__
        print 'javabridge: %s' % javabridge.__version__
#        print 'joblib: %s' % joblib.__version__
        print 'mahotas: %s' % mahotas.__version__
        print 'matplotlib: %s '% matplotlib.__version__
        print 'MySQLdb (MySQL-python): %s' % MySQLdb.__version__
        print 'numpy: %s' % numpy.__version__
        print 'prokaryote: %s' % prokaryote.__version__
        print 'bioformats (python-bioformats): %s' % bioformats.__version__
        print 'zmq (pyzmq): %s' % zmq.__version__
        print 'raven: %s' % raven.VERSION
        print 'requests: %s' % requests.__version__
        print 'skimage (scikit-image): %s' % skimage.__version__
        print 'sklearn (scikit-learn): %s' % sklearn.__version__
        print 'scipy: %s' % scipy.__version__
        
    def settings(self):
        return [
            self.blarg
        ]

    def volumetric(self):
        return True