Chris Allan chris-allan

Setting up Lens

This is a work in progress, and is not a finished document.

This post douments how I've managed to set up Lens to run locally, and how I've been able bring into my Lens document a new node type, populated by the content of a custom element in the XML. It also includes some description and examples of what constitutes a Lens article node, and some more general notes on ways in to the code.

Prerequisites

The top level prerequisites to get you started are listed below. There will be some more you'll come across along the way, for specific, optional tasks.

git
nodejs

This document has now been incorporated into the uWSGI documentation:

http://uwsgi-docs.readthedocs.org/en/latest/tutorials/Django_and_nginx.html

Set up Django, nginx and uwsgi

Steps with explanations to set up a server using:

Markdown and reStructuredText

GitHub supports several lightweight markup languages for documentation; the most popular ones (generally, not just at GitHub) are Markdown and reStructuredText. Markdown is sometimes considered easier to use, and is often preferred when the purpose is simply to generate HTML. On the other hand, reStructuredText is more extensible and powerful, with native support (not just embedded HTML) for tables, as well as things like automatic generation of tables of contents.

See http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-install-homebrew.html for instructions on how to install OMERO via Homebrew

	# Nginx+Unicorn best-practices congifuration guide. Heartbleed fixed.
	# We use latest stable nginx with fresh openssl, zlib and pcre dependencies.
	# Some extra handy modules to use: --with-http_stub_status_module --with-http_gzip_static_module
	#
	# Deployment structure
	#
	# SERVER:
	# /etc/init.d/nginx (1. nginx)
	# /home/app/public_html/app_production/current (Capistrano directory)
	#

	apply plugin:'java'

	defaultTasks 'test'
	//defaultTasks 'clean', 'build'

	// 設定項目↓↓↓
	group = 'org.waman' // グループ名 & implementation-vendor
	version = 1.0 // アプリケーション・バージョン& implementation-version
	def jdkVersion = 1.7
	def enc = 'UTF-8'

	import random

	from datetime import datetime
	import struct
	import binascii

	class SequentialID(object):
	def __init__(self):
	self.rng = random.Random()
	self.reinit()

	from datetime import datetime

	# See https://gist.github.com/672279/
	from inoi.util.random import sequential_id, monotonic_id

	import httplib2
	import json
	import random
	import time
	import sys

	#! /usr/bin/env python3

	import select
	import socket
	import time

	TIME_WAIT = 0.01
	BIND_ADDR = ''
	BIND_PORT = 8443
	SERV_ADDR = 'server.example.com'