chrisvoncsefalvay

import base64
from typing import Union, Literal, Optional
import openai
import requests
import os, io
from PIL import Image
from openai import OpenAI
import uuid
import argparse

chrisvoncsefalvay

Regexes to de-junk VAERS, removing nominal test results, maintenance and other non-symptomatic entities.

chrisvoncsefalvay

from datetime import datetime

t = datetime.now()
tstring = f"{t.day:02}{t.hour:02}{t.minute:02}{t.strftime('%b').upper()}{t.year}"

chrisvoncsefalvay

states_by_borders = {
  # does not include water borders:
  # MI < > MN
  # NY < > RI
  "AL": ["FL", "GA", "MS", "TN"],
  "AK": [],
  "AZ": ["CA", "CO", "NV", "NM", "UT"],
  "AR": ["LA", "MS", "MO", "OK", "TN", "TX"],
  "CA": ["AZ", "NV", "OR"],
  "CO": ["AZ", "KS", "NE", "NM", "OK", "UT", "WY"],

chrisvoncsefalvay

import pandas as pd
from random import choices
import dash
import dash_core_components as dcc
import dash_html_components as html
import pandas as pd
import numpy as np
import plotly.graph_objects as go
from dash.dependencies import Input, Output

chrisvoncsefalvay

from sshtunnel import SSHTunnelForwarder
from sqlalchemy import create_engine
from sqlalchemy.orm import sessionmaker
from functools import wraps

# secrets.py contains credentials, etc.
import secrets

def get_engine_for_port(port):
    return create_engine('postgresql://{user}:{password}@{host}:{port}/{db}'.format(

chrisvoncsefalvay

FROM ubuntu:18.10

LABEL maintainer="Chris von Csefalvay <[email protected]>"

RUN apt-get update
RUN apt-get install -y python3 python3-dev python3-pip

COPY requirements.txt /tmp/requirements.txt
RUN pip3 install -r /tmp/requirements.txt

chrisvoncsefalvay

# R code that checks if a package is installed, and installs it from CRAN if not.

#' Install packages from a list if not present
#'
#' Installs packages from a provided list if they are not already installed.
#'
#' @param packages_list a list of packages to be installed
#' 
#' @export
cran_install_if_not_present <- function(packages_list) {

chrisvoncsefalvay

# Fetch most recent DRC data.
library(readr)
library(curl)

current_drc_data <- Sys.time() %>%
  format("%d%H%M%S%b%Y") %>%
  paste("raw_data/drc/", "drc-", ., ".csv", sep = "") %T>%
  curl_fetch_disk("https://raw.githubusercontent.com/cmrivers/ebola_drc/master/drc/data.csv", .) %>%
  read_csv()

chrisvoncsefalvay

POWERLEVEL9K_MODE='awesome-patched'
POWERLEVEL9K_BATTERY_CHARGED='green'
POWERLEVEL9K_BATTERY_DISCONNECTED='$DEFAULT_COLOR'
POWERLEVEL9K_BATTERY_LOW_THRESHOLD='10'
POWERLEVEL9K_BATTERY_LOW_COLOR='red'
POWERLEVEL9K_BATTERY_ICON='\uf1e6 '
POWERLEVEL9K_MULTILINE_FIRST_PROMPT_PREFIX='\n '
POWERLEVEL9K_MULTILINE_LAST_PROMPT_PREFIX='\n'
POWERLEVEL9K_MULTILINE_SECOND_PROMPT_PREFIX="$> "