Work in progress PKGBUILD for vep

vep-PKGBUILD

# Maintainer: Clint Valentine <valentine.clint@gmail.com>

pkgname=vep
pkgver=90.10
pkgrel=1
pkgdesc="Determines the effect of variants on genes, transcripts, and protein sequences as well as regulatory regions"
arch=('x86_64')
url="https://useast.ensembl.org/info/docs/tools/vep/index.html"
license=('GPL3')
depends=('perl>=5' 'perl-module-build' 'bioperl-live-git')
provides=('vep')
conflicts=('vep')
source=("https://github.com/Ensembl/ensembl-${pkgname}/archive/release/${pkgver}.tar.gz")
md5sums=('881b8ba34d5aa34f8b0c80f93e2ba50d')

build() {
  cd "${srcdir}/ensembl-${pkgname}-release-${pkgver}"

  if [[ -v "${PERL5LIB}" ]]; then
    export PERL5LIB="${PERL5LIB}:/usr/share/perl5/vendor_perl"
  else
    PERL5LIB="/usr/share/perl5/vendor_perl"
  fi
}

check() {
  cd "${srcdir}/ensembl-${pkgname}-release-${pkgver}"

  # make test
}

package() {
  cd "${srcdir}/ensembl-${pkgname}-release-${pkgver}"

  # install -Dm775 "bin/verifyBamID" "${pkgdir}/usr/bin/verifyBamID"
  # install -Dm644 "copyrights/LICENSE.txt" "${pkgdir}/usr/share/licenses/verifyBamID-${pkgver}/LICENSE.txt"
  # install -Dm644 "copyrights/COPYING" "${pkgdir}/usr/share/licenses/verifyBamID-${pkgver}/COPYING"
  # install -Dm644 "src/base/LICENSE" "${pkgdir}/usr/share/licenses/verifyBamID-${pkgver}/LICENSE_Chromium"
}