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clintval/flt3-itd-tcga.md

Created April 24, 2019 17:50
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FLT3 ITDs in TCGA Data
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flt3-itd-tcga.md

Note: Build 37 coordinates.

TCGA-AB-2812   13 28608256 28608257 -  TCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAG
TCGA-AB-2825   13 28608217 28608218 -  CCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTATTCGTG
TCGA-AB-2830   13 28608242 28608243 -  ACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTACCCCCTCGGGGGG
TCGA-AB-2836   13 28608267 28608268 -  TTCTCTGAAATCAACGTAGAAGTACTCATTATC
TCGA-AB-2840   13 28608248 28608249 -  ATTTGAGATCATATTCAT
TCGA-AB-2844   13 28608214 28608215 -  TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCT
TCGA-AB-2853   13 28608268 28608269 -  TCTCTGAAATCAACGTAG
TCGA-AB-2869   13 28608253 28608254 -  GATCATATTCATATTCTCCAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGA
TCGA-AB-2870   13 28608258 28608275 -  CATATTCATATTCTCTGA   GGGGTGGGGGGG
TCGA-AB-2871   13 28608262 28608263 -  TCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATC
TCGA-AB-2875   13 28608261 28608262 -  TTCATATTCTCTGAAATCAACGTAGGCCAC
TCGA-AB-2877   13 28608244 28608245 -  TCCCATTTGAGATCATAT
TCGA-AB-2879   13 28608250 28608251 -  TTGAGATCATATTCATATTCTCTGAAATCAACG
TCGA-AB-2880   13 28608251 28608252 -  TGAGATCATATTCATATTCTC
TCGA-AB-2895   13 28608218 28608219 -  CAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATT
TCGA-AB-2906   13 28608255 28608256 -  ATCATATTCATATTCTCTGAA
TCGA-AB-2909   13 28608271 28608272 -  ATTCTG
TCGA-AB-2913   13 28608240 28608241 -  AAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGA
TCGA-AB-2915   13 28608260 28608261 -  ATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCAG
TCGA-AB-2918   13 28608254 28608255 -  ATCATATTCATATTCTCTGAA
TCGA-AB-2921   13 28608262 28608263 -  CATATTCTCTGAAATCAACGTATC
TCGA-AB-2922   13 28608275 28608276 -  AATCAACGTAGAAGTACTCATTATCTTCCGGGG
TCGA-AB-2925   13 28608255 28608256 -  ATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATT
TCGA-AB-2930   13 28608273 28608274 -  GAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTACC
TCGA-AB-2931   13 28608219 28608220 -  AAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGCCCTG
TCGA-AB-2934   13 28608257 28608258 -  CATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTTAGGAGCCGGTCC
TCGA-AB-2942   13 28608258 28608259 -  TATTCATATTCTCTGAAATCAACG
TCGA-AB-2965   13 28608338 28608339 -  TTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATCTGTAGCTGGCTTTT
TCGA-AB-2970   13 28608258 28608259 -  GGCGATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG
TCGA-AB-2976   13 28608256 28608257 -  TCATATTCATATTCATATTCATAT
TCGA-AB-2980   13 28608255 28608256 -  ATCATATTCATATTCTCTGAA
TCGA-AB-2981   13 28608311 28608312 -  ATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGCCA
TCGA-AB-2986   13 28608263 28608264 -  CATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG
TCGA-AB-2988   13 28608214 28608215 -  TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCAT
TCGA-AB-2993   13 28608273 28608274 -  GAAATCAACGTAGAAGTACTCATTATCTGA
TCGA-AB-2994   13 28608255 28608256 -  ATCATATTCATATTCTCTGAA
TCGA-AB-2998   13 28608255 28608256 -  ATCATATTCATATTCTCTGAA
TCGA-AB-3006   13 28608262 28608263 -  TCATATTCTCTGAAATCAACGTAGAAGTACTCA
TCGA-AB-3007   13 28608255 28608256 -  ATCATATTCATATTCTCTGAA

Source: Genomic and Epigenomic Landscapes of Adult de novo Acute Myeloid Leukemia

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