Skip to content

Instantly share code, notes, and snippets.

Show Gist options
  • Select an option

  • Save clintval/6de45aa44e72088537daa73b4d5206a1 to your computer and use it in GitHub Desktop.

Select an option

Save clintval/6de45aa44e72088537daa73b4d5206a1 to your computer and use it in GitHub Desktop.
Data manifest from DOI:10.1073/pnas.1700759114
{
"A10": [
0.0034329041, 0.0137316166, 0.0344053282, 0.0188924926, 0.0240140593,
0.0212451426, 0.0821539635, 0.0064712216, 0.0620039955, 0.0524827040,
0.2530320358, 0.0485341620, 0.0114430138, 0.0159038497, 0.0332954789,
0.0099940168, 0.0068658083, 0.0000000000, 0.0062555142, 0.0113354956,
0.0026682288, 0.0070817142, 0.0072488791, 0.0161780540, 0.0074404795,
0.0071567324, 0.0295204042, 0.0000000000, 0.0022886028, 0.0000000000,
0.0030268617, 0.0099940168, 0.0000000000, 0.0000000000, 0.0218942998,
0.0000000000, 0.0000000000, 0.0035408571, 0.0144977583, 0.0032356108,
0.0049603196, 0.0023855775, 0.0274118039, 0.0097068324, 0.0022886028,
0.0095423098, 0.0242148937, 0.0033313389, 0.0000000000, 0.0000000000,
0.0000000000, 0.0030106753, 0.0000000000, 0.0067023367, 0.0043812940,
0.0000000000, 0.0000000000, 0.0035859636, 0.0000000000, 0.0000000000,
0.0000000000, 0.0000000000, 0.0059576326, 0.0000000000, 0.0027067129,
0.0000000000, 0.0000000000, 0.0000000000, 0.0000000000, 0.0033511683,
0.0000000000, 0.0000000000, 0.0037784985, 0.0000000000, 0.0031807699,
0.0000000000, 0.0000000000, 0.0000000000, 0.0059576326, 0.0019020145,
0.0000000000, 0.0000000000, 0.0050044114, 0.0000000000, 0.0000000000,
0.0000000000, 0.0021906470, 0.0000000000, 0.0037784985, 0.0000000000,
0.0063615399, 0.0000000000, 0.0030432231, 0.0000000000, 0.0000000000,
0.0000000000],
"mutpos": {
"10": {
"AFB1 - Whole Liver": {
"1642": "150316Ess/150316Ess_D15-1642-1334L/x1642-1334L_001.dcs_d100.mutpos",
"1643": "150316Ess/150316Ess_D15-1643-1334L/x1643-1334L_001.dcs_d100.mutpos",
"1644": "150316Ess/150316Ess_D15-1644-1334L/x1644-1334L_001.dcs_d100.mutpos",
"8114": "141121Ess/141121Ess_D14-8114-1256L/x8114-1256L_001.dcs_d100.mutpos"
},
"DMSO - Whole Liver": {
"1639": "150316Ess/150316Ess_D15-1639-1334L/x1639-1334L_001.dcs_d100.mutpos",
"1640": "150316Ess/150316Ess_D15-1640-1334L/x1640-1334L_001.dcs_d100.mutpos",
"1641": "150316Ess/150316Ess_D15-1641-1334L/x1641-1334L_001.dcs_d100.mutpos",
"4508": "160513Ess/160513Ess_D16-4508-1916L/160513Ess_D16-4508_d100.mutpos",
"4509": "160513Ess/160513Ess_D16-4509-1916L/160513Ess_D16-4509_d100.mutpos",
"8113": "141121Ess/141121Ess_D14-8113-1256L/x8113-1256L_001.dcs_d100.mutpos"
}
},
"72": {
"AFB1 - Hepatocytes": {
"1798": "160301Ess/160301Ess_D16-1798-1809L/160301Ess_D16-1798_d100.mutpos",
"3497-1440L": "150507Ess/150507Ess_D15-3497-1440L/x3497-1440L_001.dcs_d100.mutpos",
"3497-1483L": "150507Ess/150507Ess_D15-3497-1483L/x3497-1483L_001.dcs_d100.mutpos",
"3497-1488L": "150507Ess/150507Ess_D15-3497-1488L/x3497-1488L_001.dcs_d100.mutpos"
},
"AFB1 - Tumor": {
"6210": "160701Ess/160701Ess_D16-6210-XXXX/160701Ess_D16-6210_d100.mutpos",
"6211": "160701Ess/160701Ess_D16-6211-XXXX/160701Ess_D16-6211_d100.mutpos",
"6212": "160701Ess/160701Ess_D16-6212-XXXX/160701Ess_D16-6212_d100.mutpos",
"6213": "160701Ess/160701Ess_D16-6213-XXXX/160701Ess_D16-6213_d100.mutpos"
},
"DMSO - Hepatocytes": {
"1795": "160301Ess/160301Ess_D16-1795-1809L/160301Ess_D16-1796_d100.mutpos",
"3494-1440L": "150507Ess/150507Ess_D15-3494-1440L/x3494-1440L_001.dcs_d100.mutpos",
"3494-1483L": "150507Ess/150507Ess_D15-3494-1483L/x3494-1483L_001.dcs_d100.mutpos",
"3494-1488L": "150507Ess/150507Ess_D15-3494-1488L/x3494-1488L_001.dcs_d100.mutpos"
},
"DMSO - Whole Liver": {
"4510": "160513Ess/160513Ess_D16-4510-1916L/160513Ess_D16-4510_d100.mutpos",
"4511": "160513Ess/160513Ess_D16-4511-1916L/160513Ess_D16-4511_d100.mutpos"
}
}
},
"pileup": {
"10": {
"AFB1 - Whole Liver": {
"1642": "150316Ess/150316Ess_D15-1642-1334L/x1642-1334L_001.dcs.pileup",
"1643": "150316Ess/150316Ess_D15-1643-1334L/x1643-1334L_001.dcs.pileup",
"1644": "150316Ess/150316Ess_D15-1644-1334L/x1644-1334L_001.dcs.pileup",
"8114": "141121Ess/141121Ess_D14-8114-1256L/x8114-1256L_001.dcs.pileup"
},
"DMSO - Whole Liver": {
"1639": "150316Ess/150316Ess_D15-1639-1334L/x1639-1334L_001.dcs.pileup",
"1640": "150316Ess/150316Ess_D15-1640-1334L/x1640-1334L_001.dcs.pileup",
"1641": "150316Ess/150316Ess_D15-1641-1334L/x1641-1334L_001.dcs.pileup",
"4508": "160513Ess/160513Ess_D16-4508-1916L/160513Ess_D16-4508.pileup",
"4509": "160513Ess/160513Ess_D16-4509-1916L/160513Ess_D16-4509.pileup",
"8113": "141121Ess/141121Ess_D14-8113-1256L/x8113-1256L_001.dcs.pileup"
}
},
"72": {
"AFB1 - Hepatocytes": {
"1798": "160301Ess/160301Ess_D16-1798-1809L/160301Ess_D16-1798.pileup",
"3497-1440L": "150507Ess/150507Ess_D15-3497-1440L/x3497-1440L_001.dcs.pileup",
"3497-1483L": "150507Ess/150507Ess_D15-3497-1483L/x3497-1483L_001.dcs.pileup",
"3497-1488L": "150507Ess/150507Ess_D15-3497-1488L/x3497-1488L_001.dcs.pileup"
},
"AFB1 Tumor": {
"6210": "160701Ess/160701Ess_D16-6210-XXXX/160701Ess_D16-6210.pileup",
"6211": "160701Ess/160701Ess_D16-6211-XXXX/160701Ess_D16-6211.pileup",
"6212": "160701Ess/160701Ess_D16-6212-XXXX/160701Ess_D16-6212.pileup",
"6213": "160701Ess/160701Ess_D16-6213-XXXX/160701Ess_D16-6213.pileup"
},
"DMSO - Hepatocytes": {
"1795": "160301Ess/160301Ess_D16-1795-1809L/160301Ess_D16-1796.pileup",
"3494-1440L": "150507Ess/150507Ess_D15-3494-1440L/x3494-1440L_001.dcs.pileup",
"3494-1483L": "150507Ess/150507Ess_D15-3494-1483L/x3494-1483L_001.dcs.pileup",
"3494-1488L": "150507Ess/150507Ess_D15-3494-1488L/x3494-1488L_001.dcs.pileup"
},
"DMSO - Whole Liver": {
"4510": "160513Ess/160513Ess_D16-4510-1916L/160513Ess_D16-4510.pileup",
"4511": "160513Ess/160513Ess_D16-4511-1916L/160513Ess_D16-4511.pileup"
}
}
}
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment