Colin Diesh cmdcolin

can you remove all chakra styles and just use unstyled divs for example

I'll help you remove all Chakra UI styles from the small-card.tsx file and replace them with unstyled divs. Let me analyze what needs to be changed.

I need to check the util.ts file first to understand the arePropsEqual function that's being used in the component.

╭─  view  succeeded
│ running tool

GTF to GFF conversion in bioinformatics

These are two very similar formats. But some people are still just very stuck on GTF, despite being less well defined than GFF.

CJS (commonjs) to ESM (ecmascript modules) in javascript

Just replace your require with import right? Sometimes it works, sometimes it doesn't. There is a lot of insanity that goes on, and it is really hard to do a proper technical analysis because ESM is pretty strict while CJS and the

	{
	"plugins": [
	{
	"name": "MsaView",
	"url": "https://jbrowse.org/plugins/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.umd.production.min.js"
	}
	],
	"assemblies": [
	{
	"name": "hg38",


	▝▜▄ Gemini CLI v0.34.0
	▝▜▄
	▗▟▀ Signed in with Google: colin.diesh@gmail.com /auth
	▝▀ Plan: Gemini Code Assist for individuals /upgrade

	╭───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮
	│ We're making changes to Gemini CLI that may impact your workflow. │
	│ What's Changing: We are adding more robust detection of policy-violating use cases and restricting models for free tier users. │
	│ How it affects you: If you need use of Gemini pro models you will need to upgrade to a supported paid plan. │

	#!/bin/bash
	export OUT=/var/www/html/jbrowse2
	sudo apt-get update
	sudo apt-get install nodejs wget apache2 tabix samtools minimap2
	sudo service apache2 start
	## confirm node.js greater than or equal to v18 is installed
	node --version
	sudo npm install -g @jbrowse/cli
	## confirm that the jbrowse CLI is installed
	jbrowse --version

	#!/bin/bash
	export OUT=/var/www/html/jbrowse2
	sudo apt-get update
	sudo apt-get install nodejs wget apache2 tabix samtools minimap2
	sudo service apache2 start

	## confirm node.js greater than or equal to v18 is installed
	node --version
	sudo npm install -g @jbrowse/cli

	#!/bin/bash

	# Build a 3-genome Helicobacter pylori synteny demo for JBrowse 2.
	# Requires: datasets (NCBI), samtools, minimap2, bgzip, tabix, and @jbrowse/cli.
	set -euo pipefail

	## this should be an absolute path. this one is a web accessible directory for apache2
	export OUT=/var/www/html/jbrowse2

	## download and unzip NCBI genomes (filenames match the strain each accession is renamed to below)

	[
	{
	"role": "user",
	"parts": [
	{
	"text": "<session_context>\nThis is the Gemini CLI. We are setting up the context for our chat.\nToday's date is Wednesday, April 15, 2026 (formatted according to the user's locale).\nMy operating system is: linux\nThe project's temporary directory is: /home/cdiesh/.gemini/tmp/jbrowse-components\n- Workspace Directories:\n - /home/cdiesh/src/jbrowse-components\n- Directory Structure:\n\nShowing up to 200 items (files + folders). Folders or files indicated with ... contain more items not shown, were ignored, or the display limit (200 items) was reached.\n\n/home/cdiesh/src/jbrowse-components/\n├───_typos.toml\n├───.editorconfig\n├───.gitignore\n├───.ignore\n├───.prettierignore\n├───.prettierrc.json\n├───babel.config.cjs\n├───CHANGELOG.md\n├───CLAUDE.md\n├───CODE_OF_CONDUCT.md\n├───codecov.yml\n├───CONTRIBUTING.md\n├───eslint.config.mjs\n├───global.d.ts\n├───integration.test.js\n├───jest.config.js\n├───LICENSE\n├───package.json\n├───pnpm-lock.yam

	import os
	import re
	import sys

	# Check if command line argument is provided
	if len(sys.argv) < 2:
	print("Usage: python script.py <input_file> [output_directory]")
	sys.exit(1)

	input_file = sys.argv[1]