Colin Diesh cmdcolin

I'm having a problem with my layer file not properly interning my widget template strings resulting in separate requests for each template file:

I have set up a simple example repo with an application containing two widgets (App & Widget). My goal is to build my entire application (JS & HTML) into one file. Here's my build profile:

var profile = {
    basePath: '../src/',
    action: 'release',
    optimize: 'closure',
    selectorEngine: 'acme',

Firefox bullshit removal

Updated: Just use qutebrowser (and disable javascript). The web is done for.

CoffeeScript Family (& Friends)

CoffeeScript Unfancy JavaScript
CoffeeScript II: The Wrath of Khan Rewrite of the CS compiler

Family (share genes with CoffeeScript)

Coco A CoffeeScript dialect that aims to be more radical and practical, also acts as a test bed for features that get imported in CoffeeScript.
- LiveScript is a fork of Coco that is much more compatible with CoffeeScript, more functional, and with more features.
IcedCoffeeScript A CoffeeScript dialect that adds support for await and defer keywords which simplify async control flow.

TDF

TDF is a binary format developed by the IGV team at Broad Institute.

Overview

Concepts

Source	Dst. file type	Protocol	Time (s)	Command Line
NCBI	.sra	ftp	296	wget
NCBI	.fastq.gz	sra toolkit	~23000	fastq-dump -Z --gzip --split-spot
local file	sra=>fastq.gz	sra toolkit	~15000	fastq-dump --gzip --split-spot --split-3
EBI	.fastq.gz	aspera	513+492	aspera -QT -l 300m
EBI	.fastq.gz	ftp	1876+1946	wget

Notes:

	// JVM sizing options
	-server -Xms40g -Xmx40g -XX:MaxDirectMemorySize=4096m -XX:PermSize=256m -XX:MaxPermSize=256m
	// Young generation options
	-XX:NewSize=6g -XX:MaxNewSize=6g -XX:+UseParNewGC -XX:MaxTenuringThreshold=2 -XX:SurvivorRatio=8 -XX:+UnlockDiagnosticVMOptions -XX:ParGCCardsPerStrideChunk=32768
	// Old generation options
	-XX:+UseConcMarkSweepGC -XX:CMSParallelRemarkEnabled -XX:+ParallelRefProcEnabled -XX:+CMSClassUnloadingEnabled -XX:CMSInitiatingOccupancyFraction=80 -XX:+UseCMSInitiatingOccupancyOnly
	// Other options
	-XX:+AlwaysPreTouch -XX:+PrintGCDetails -XX:+PrintGCTimeStamps -XX:+PrintGCDateStamps -XX:+PrintTenuringDistribution -XX:+PrintGCApplicationStoppedTime -XX:-OmitStackTraceInFastThrow

	#include <stdio.h>
	#include <string.h>
	#include <stdlib.h>
	#include <htslib/sam.h>

	int main(int argc, char *argv[]){

	samFile *fp_in = hts_open(argv[1],"r"); //open bam file
	bam_hdr_t *bamHdr = sam_hdr_read(fp_in); //read header
	bam1_t *aln = bam_init1(); //initialize an alignment

	// Adapted from http://stackoverflow.com/questions/563198/how-do-you-detect-where-two-line-segments-intersect/1968345#1968345
	var eps = 0.0000001;
	function between(a, b, c) {
	return a-eps <= b && b <= c+eps;
	}
	function segment_intersection(x1,y1,x2,y2, x3,y3,x4,y4) {
	var x=((x1y2-y1x2)(x3-x4)-(x1-x2)(x3y4-y3x4)) /
	((x1-x2)(y3-y4)-(y1-y2)(x3-x4));
	var y=((x1y2-y1x2)(y3-y4)-(y1-y2)(x3y4-y3x4)) /
	((x1-x2)(y3-y4)-(y1-y2)(x3-x4));

	#!/bin/bash

	export PATH='/usr/local/bin:$PATH'

	ansiweather -a off -l 'San Francisco' \
	\| cut -d '>' -f 2 \
	\| cut -d '-' -f1 \
	\| awk '{ print $1 $2 }' \
	\| tr -d 'C'

	#!/bin/bash

	less_command='\| less $less_no_init -aiF -Ps"Manual page\: $man_page (?ltline %lt?L/%L.:byte %bB?s/%s..? (END):?pB %pB\%..)"'

	# Get section
	if [[ $1 =~ [0-9]+ ]]
	then
	section=$1
	shift
	fi