This is complete taken from Ryan D on biostar: http://www.biostars.org/p/2909/#16419
It takes a region in a format like "chr2:1234-3456". If an rs number is specified after the region, it will output the R^2 for every SNP in that region with the requested SNP; otherwise, it is all-vs-all.
| var fs = require('fs'); | |
| var lame = require('lame'); | |
| var Speaker = require('speaker'); | |
| fs.createReadStream(process.argv[2]) | |
| .pipe(new lame.Decoder()) | |
| .on('format', function (format) { | |
| this.pipe(new Speaker(format)); | |
| }); |
| # From http://garmoncheg.blogspot.com/2012/06/pretty-git-log.html | |
| git config --global alias.lg "log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --" |
| # 0 is too far from ` ;) | |
| set -g base-index 1 | |
| # Automatically set window title | |
| set-window-option -g automatic-rename on | |
| set-option -g set-titles on | |
| #set -g default-terminal screen-256color | |
| set -g status-keys vi | |
| set -g history-limit 10000 |
| #!/bin/bash | |
| while :; do | |
| stats=$(passenger-memory-stats | grep Rack) | |
| if [ "$stats" != "" ]; then | |
| echo $stats | |
| echo $stats | egrep --color=always 'MB ([12][0-9]|[3-9])..\.. MB' | |
| pid=$(echo $stats | egrep 'MB ([12][0-9]|[3-9])..\.. MB' | awk '{ print $1 }') | |
| if [ "$pid" != "" ]; then | |
| ps aux | grep $pid |
