dypsilon

Frontend Development

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brentp

Linkage Disequilibrium Calculation

This is complete taken from Ryan D on biostar: http://www.biostars.org/p/2909/#16419

It takes a region in a format like "chr2:1234-3456". If an rs number is specified after the region, it will output the R^2 for every SNP in that region with the requested SNP; otherwise, it is all-vs-all.

TooTallNate

var fs = require('fs');
var lame = require('lame');
var Speaker = require('speaker');

fs.createReadStream(process.argv[2])
  .pipe(new lame.Decoder())
  .on('format', function (format) {
    this.pipe(new Speaker(format));
  });

johanmeiring

# From http://garmoncheg.blogspot.com/2012/06/pretty-git-log.html
git config --global alias.lg "log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --"

spicycode

# 0 is too far from ` ;)
set -g base-index 1

# Automatically set window title
set-window-option -g automatic-rename on
set-option -g set-titles on

#set -g default-terminal screen-256color
set -g status-keys vi
set -g history-limit 10000

lackac

#!/bin/bash

while :; do
  stats=$(passenger-memory-stats | grep Rack)
  if [ "$stats" != "" ]; then
    echo $stats
    echo $stats | egrep --color=always 'MB ([12][0-9]|[3-9])..\.. MB'
    pid=$(echo $stats | egrep 'MB ([12][0-9]|[3-9])..\.. MB' | awk '{ print $1 }')
    if [ "$pid" != "" ]; then
      ps aux | grep $pid