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March 4, 2024 23:25
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A modified version of obi biobank specimens with some definitions intentionally removed
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| ontology ID | label | definition | |
|---|---|---|---|
| ID | A rdfs:label | A definition | |
| OBI:0002500 | amniotic fluid specimen | A specimen that is derived from amniotic fluid. | |
| OBI:0002501 | bile specimen | A specimen that is derived from bile. | |
| OBI:0002502 | cerebrospinal fluid specimen | A specimen that is derived from cerbrospinal fluid. | |
| OBI:0002503 | feces specimen | A specimen that is derived from feces. | |
| OBI:0002504 | digestive system fluid or secretion specimen | A specimen that is derived from digestive system fluid or secretion. | |
| OBI:0002505 | milk specimen | A specimen that is derived from milk. | |
| OBI:0002506 | pericardial fluid specimen | A specimen that is derived from pericardial fluid. | |
| OBI:0002507 | saliva specimen | A specimen that is derived from saliva. | |
| OBI:0002508 | sputum specimen | A specimen that is derived from sputum. | |
| OBI:0002509 | sweat specimen | A specimen that is derived from sweat. | |
| OBI:0002510 | synovial fluid specimen | A specimen that is derived from synovial fluid. | |
| OBI:0002511 | vitreous humor specimen | A specimen that is derived from vireous humor. | |
| OBI:0002512 | bone marrow specimen | A specimen that is derived from bone marrow. | |
| OBI:0002513 | placenta specimen | A specimen that is derived from placenta. | |
| OBI:0002514 | peritoneal fluid specimen | A specimen that is derived from peritoneal fluid. | |
| OBI:0002515 | pleural fluid specimen | A specimen that is derived from pleural fluid. | |
| OBI:0002516 | brain specimen | A specimen that is derived from brain. | |
| OBI:0002517 | hair specimen | A specimen that is derived from hair. | |
| OBI:0002518 | prostate gland specimen | A specimen that is derived from prostate gland. | |
| OBI:0002519 | skeletal muscle tissue specimen | A specimen that is derived from skeletal muscle. | |
| OBI:0002520 | heart specimen | A specimen that is derived from heart. | |
| OBI:0002521 | renal medulla specimen | A specimen that is derived from renal medulla. | |
| OBI:0002522 | adrenal gland specimen | A specimen that is derived from adrenal gland. | |
| OBI:0002523 | breast specimen | A specimen that is derived from breast. | |
| OBI:0002524 | urinary bladder specimen | A specimen that is derived from urinary bladder. | |
| OBI:0002525 | tibial artery specimen | A specimen that is derived from tibial artery. | |
| OBI:0002526 | skin of body specimen | A specimen that is derived from skin. | |
| OBI:0002527 | pancreas specimen | A specimen that is derived from pancreas. | |
| OBI:0002528 | stomach specimen | A specimen that is derived from stomach. | |
| OBI:0002529 | pituitary gland specimen | A specimen that is derived from pituitary gland. | |
| OBI:0002530 | adipose tissue specimen | A specimen that is derived from adipose tissue. | |
| OBI:0002531 | cortex of kidney specimen | A specimen that is derived from cortex of kidney. | |
| OBI:0002532 | esophagus mucosa specimen | A specimen that is derived from esophagus mucosa. | |
| OBI:0002533 | colon specimen | A specimen that is derived from colon. | |
| OBI:0002534 | lung specimen | A specimen that is derived from lung. | |
| OBI:0002535 | esophagus muscularis mucosa specimen | A specimen that is derived from esophagus muscularis mucosa. | |
| OBI:0002536 | cerebral cortex specimen | A specimen that is derived from cerebral cortex. | |
| OBI:0002537 | thyroid gland specimen | A specimen that is derived from thyroid gland. | |
| OBI:0002538 | cerebellum specimen | A specimen that is derived from cerebellum. | |
| OBI:0002539 | tibial nerve specimen | A specimen that is derived from tibial nerve. | |
| OBI:0002540 | coronary artery specimen | A specimen that is derived from coronary artery. | |
| OBI:0002541 | spleen specimen | ||
| OBI:0002542 | aorta specimen | ||
| OBI:0002543 | atrial appendage specimen | ||
| OBI:0002544 | esophagogastric junction specimen | ||
| OBI:0002545 | ileum specimen | ||
| OBI:0002546 | liver specimen | ||
| OBI:0002547 | minor salivary gland specimen | ||
| OBI:0002548 | omentum specimen | ||
| OBI:0002549 | ovary specimen | ||
| OBI:0002550 | sigmoid colon specimen | ||
| OBI:0002551 | suprapubic skin specimen | ||
| OBI:0002552 | testis specimen | ||
| OBI:0002553 | uterus specimen | ||
| OBI:0002554 | vagina specimen | ||
| OBI:0002603 | areolar swab specimen | ||
| OBI:0002604 | breast swab specimen | ||
| OBI:0002605 | cheek swab specimen | ||
| OBI:0002606 | nasopharyngeal swab specimen | ||
| OBI:0002607 | oral swab specimen | ||
| OBI:0002608 | oropharyngeal swab specimen | ||
| OBI:0002609 | rectal swab specimen | ||
| OBI:0002610 | tongue swab specimen | ||
| OBI:0002611 | vagina swab specimen | ||
| OBI:0002612 | fecal swab specimen | ||
| OBI:0002613 | environmental swab specimen | ||
| OBI:0002746 | induced sputum specimen | A sputum specimen that is collected from an organism following its inhalation of a nebulized salt solution. | |
| OBI:0002778 | tracheal aspirate specimen | ||
| OBI:0002779 | mid-turbinate nasal swab specimen | ||
| OBI:0002780 | nasal aspirate specimen | ||
| OBI:0002781 | lower respiratory tract aspirate specimen | ||
| OBI:0002782 | upper respiratory specimen | ||
| OBI:0002783 | lower respiratory tract specimen | ||
| OBI:0002784 | anterior nasal swab specimen | ||
| OBI:0002971 | endotracheal tube specimen | ||
| OBI:0002972 | endotracheal aspirate specimen | ||
| OBI:0003054 | blood specimen in vacutainer | A blood specimen that is located in a vacutainer. | |
| OBI:0003055 | blood specimen on filter paper | A blood specimen that is located on a filter paper. | |
| OBI:0003380 | placental blood specimen | ||
| OBI:0003415 | peripheral blood mononuclear cell specimen | A processed specimen that is extracted from whole blood using gradient centrifugation that separates the blood into a layer of peripheral blood mononuclear cells under the top layer of plasma. It contains lymphocytes, monocytes or macrophages that are critical components in the immune system. | |
| OBI:0003482 | lymph specimen | ||
| OBI:0003483 | digestive tract specimen | ||
| OBI:0003595 | nasal lavage fluid | A specimen collected through nasal cavity lavage that contains the reagents used to for the lavage process, organisms, cells, cellular secretions, and other biomaterials present in the nasal cavity space. | |
| OBI:2000000 | uterine cervix specimen | ||
| OBI:2000001 | urethra specimen | ||
| OBI:2000002 | cervical mucus specimen | ||
| OBI:2000003 | throat specimen | ||
| OBI:2000004 | eye specimen | ||
| OBI:2000005 | respiratory system specimen | ||
| OBI:2000006 | upper respiratory tract specimen | ||
| OBI:2000007 | nasopharynx specimen | ||
| OBI:2000008 | semen specimen | ||
| OBI:2000009 | bodily fluid specimen | ||
| OBI:2000010 | chorionic villus specimen | ||
| OBI:2000011 | meconium specimen | ||
| OBI:2000012 | umbilical cord blood specimen | ||
| OBI:2000013 | arterial blood specimen | ||
| OBI:2000014 | venous blood specimen | ||
| OBI:2000015 | capillary blood specimen | ||
| OBI:2000016 | erythrocyte specimen | ||
| OBI:2000017 | reticulocyte specimen | ||
| OBI:2000018 | leukocyte specimen |
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