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March 4, 2024 21:50
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obi-biobank-specimens
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| ontology ID | label | editor preferred term | has curation status | alternative term | definition | definition source | example of usage | term editor | editor note | curator note | ontology term requester | term tracker item | logical type | specimen collection process | gross anatomical part | collection process input | URI | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | A rdfs:label | A editor preferred term | AI has curation status | A alternative term | A definition | A definition source SPLIT=| | A example of usage SPLIT=| | A term editor SPLIT=| | A editor note SPLIT=| | A curator note SPLIT=| | A ontology term requester | A term tracker item | CLASS_TYPE | C specimen and (is_specified_output_of some %) | C specimen and (is_specified_output_of some 'specimen collection process') and ('derives from' some %) | C specimen and (is_specified_output_of some ('specimen collection process' and has_specified_input some %)) | ||
| OBI:0002500 | amniotic fluid specimen | ready for release | A specimen that is derived from amniotic fluid. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | amniotic fluid | UBERON_0000173 | |||||||||
| OBI:0002501 | bile specimen | ready for release | A specimen that is derived from bile. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | bile | UBERON_0001970 | |||||||||
| OBI:0002502 | cerebrospinal fluid specimen | ready for release | A specimen that is derived from cerbrospinal fluid. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | cerebrospinal fluid | UBERON_0001359 | |||||||||
| OBI:0002503 | feces specimen | ready for release | stool specimen | A specimen that is derived from feces. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | feces | UBERON_0001988 | ||||||||
| OBI:0002504 | digestive system fluid or secretion specimen | ready for release | gastric fluid specimen | A specimen that is derived from digestive system fluid or secretion. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | digestive system secreted substance | UBERON_0006911 | ||||||||
| OBI:0002505 | milk specimen | ready for release | A specimen that is derived from milk. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | milk | UBERON_0001913 | |||||||||
| OBI:0002506 | pericardial fluid specimen | ready for release | A specimen that is derived from pericardial fluid. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | pericardial fluid | UBERON_0002409 | |||||||||
| OBI:0002507 | saliva specimen | ready for release | A specimen that is derived from saliva. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | saliva | UBERON_0001836 | |||||||||
| OBI:0002508 | sputum specimen | ready for release | A specimen that is derived from sputum. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | sputum | UBERON_0007311 | |||||||||
| OBI:0002509 | sweat specimen | ready for release | A specimen that is derived from sweat. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | sweat | UBERON_0001089 | |||||||||
| OBI:0002510 | synovial fluid specimen | ready for release | A specimen that is derived from synovial fluid. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | synovial fluid | UBERON_0001090 | |||||||||
| OBI:0002511 | vitreous humor specimen | ready for release | vitreous fluid specimen | A specimen that is derived from vireous humor. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'vitreous humor')) | UBERON_0001797 | ||||||||
| OBI:0002512 | bone marrow specimen | ready for release | A specimen that is derived from bone marrow. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | bone marrow biopsy | bone marrow | UBERON_0002371 | |||||||||
| OBI:0002513 | placenta specimen | ready for release | A specimen that is derived from placenta. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some placenta)) | UBERON_0001987 | |||||||||
| OBI:0002514 | peritoneal fluid specimen | ready for release | A specimen that is derived from peritoneal fluid. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | peritoneal fluid | UBERON_0001268 | |||||||||
| OBI:0002515 | pleural fluid specimen | ready for release | A specimen that is derived from pleural fluid. | Chris Stoeckert, Penn Medicine Biobank | Chris Stoeckert | equivalent | collecting specimen from organism | pleural fluid | UBERON_0001087 | |||||||||
| OBI:0002516 | brain specimen | ready for release | A specimen that is derived from brain. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some brain)) | UBERON_0000955 | |||||||||
| OBI:0002517 | hair specimen | ready for release | A specimen that is derived from hair. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | strand of hair | UBERON_0001037 | |||||||||
| OBI:0002518 | prostate gland specimen | ready for release | A specimen that is derived from prostate gland. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'prostate gland')) | UBERON_0002367 | |||||||||
| OBI:0002519 | skeletal muscle tissue specimen | ready for release | A specimen that is derived from skeletal muscle. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | skeletal muscle tissue | UBERON_0001134 | |||||||||
| OBI:0002520 | heart specimen | ready for release | A specimen that is derived from heart. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some heart)) | UBERON_0000948 | |||||||||
| OBI:0002521 | renal medulla specimen | ready for release | kidney medulla specimen | A specimen that is derived from renal medulla. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'renal medulla')) | UBERON_0000362 | ||||||||
| OBI:0002522 | adrenal gland specimen | ready for release | A specimen that is derived from adrenal gland. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'adrenal gland')) | UBERON_0002369 | |||||||||
| OBI:0002523 | breast specimen | ready for release | mammary tissue specimen | A specimen that is derived from breast. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some breast)) | UBERON_0000310 | ||||||||
| OBI:0002524 | urinary bladder specimen | ready for release | A specimen that is derived from urinary bladder. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'urinary bladder')) | UBERON_0001255 | |||||||||
| OBI:0002525 | tibial artery specimen | ready for release | A specimen that is derived from tibial artery. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'tibial artery')) | UBERON_0007610 | |||||||||
| OBI:0002526 | skin of body specimen | ready for release | skin specimen | A specimen that is derived from skin. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'skin of body')) | UBERON_0002097 | ||||||||
| OBI:0002527 | pancreas specimen | ready for release | A specimen that is derived from pancreas. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some pancreas)) | UBERON_0001264 | |||||||||
| OBI:0002528 | stomach specimen | ready for release | A specimen that is derived from stomach. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some stomach)) | UBERON_0000945 | |||||||||
| OBI:0002529 | pituitary gland specimen | ready for release | A specimen that is derived from pituitary gland. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'pituitary gland')) | UBERON_0000007 | |||||||||
| OBI:0002530 | adipose tissue specimen | ready for release | A specimen that is derived from adipose tissue. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | adipose tissue | UBERON_0001013 | |||||||||
| OBI:0002531 | cortex of kidney specimen | ready for release | kidney cortex specimen | A specimen that is derived from cortex of kidney. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'cortex of kidney')) | UBERON_0001225 | ||||||||
| OBI:0002532 | esophagus mucosa specimen | ready for release | A specimen that is derived from esophagus mucosa. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'esophagus mucosa')) | UBERON_0002469 | |||||||||
| OBI:0002533 | colon specimen | ready for release | A specimen that is derived from colon. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some colon)) | UBERON_0001155 | |||||||||
| OBI:0002534 | lung specimen | ready for release | A specimen that is derived from lung. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some lung)) | UBERON_0002048 | |||||||||
| OBI:0002535 | esophagus muscularis mucosa specimen | ready for release | esophagus muscularis specimen | A specimen that is derived from esophagus muscularis mucosa. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'esophagus muscularis mucosa')) | UBERON_0004648 | ||||||||
| OBI:0002536 | cerebral cortex specimen | ready for release | brain cortex specimen | A specimen that is derived from cerebral cortex. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'cerebral cortex')) | UBERON_0000956 | ||||||||
| OBI:0002537 | thyroid gland specimen | ready for release | A specimen that is derived from thyroid gland. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'thyroid gland')) | UBERON_0002046 | |||||||||
| OBI:0002538 | cerebellum specimen | ready for release | brain cerebellum specimen | A specimen that is derived from cerebellum. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some cerebellum)) | UBERON_0002037 | ||||||||
| OBI:0002539 | tibial nerve specimen | ready for release | A specimen that is derived from tibial nerve. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'tibial nerve')) | UBERON_0001323 | |||||||||
| OBI:0002540 | coronary artery specimen | ready for release | A specimen that is derived from coronary artery. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'coronary artery')) | UBERON_0001621 | |||||||||
| OBI:0002541 | spleen specimen | ready for release | A specimen that is derived from spleen. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some spleen)) | UBERON_0002106 | |||||||||
| OBI:0002542 | aorta specimen | ready for release | A specimen that is derived from aorta. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some aorta)) | UBERON_0000947 | |||||||||
| OBI:0002543 | atrial appendage specimen | ready for release | A specimen that is derived from the atrium auricular region. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'atrium auricular region')) | UBERON_0006618 | |||||||||
| OBI:0002544 | esophagogastric junction specimen | ready for release | A specimen that is derived from the esophagogastric junction. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'esophagogastric junction')) | UBERON_0007650 | |||||||||
| OBI:0002545 | ileum specimen | ready for release | A specimen that is derived from ileum. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some ileum)) | UBERON_0002116 | |||||||||
| OBI:0002546 | liver specimen | ready for release | A specimen that is derived from liver. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some liver)) | UBERON_0002107 | |||||||||
| OBI:0002547 | minor salivary gland specimen | ready for release | A specimen that is derived from minor salivary gland. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'minor salivary gland')) | UBERON_0001830 | |||||||||
| OBI:0002548 | omentum specimen | ready for release | A specimen that is derived from omentum. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some omentum)) | UBERON_0003688 | |||||||||
| OBI:0002549 | ovary specimen | ready for release | A specimen that is derived from female gonad. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some ovary)) | UBERON_0000992 | |||||||||
| OBI:0002550 | sigmoid colon specimen | ready for release | A specimen that is derived from sigmoid colon. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'sigmoid colon')) | UBERON_0001159 | |||||||||
| OBI:0002551 | suprapubic skin specimen | ready for release | A specimen that is derived from suprapubic skin. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some 'suprapubic skin')) | UBERON_0036149 | |||||||||
| OBI:0002552 | testis specimen | ready for release | A specimen that is derived from testis. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some testis)) | UBERON_0000473 | |||||||||
| OBI:0002553 | uterus specimen | ready for release | A specimen that is derived from uterus. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some uterus)) | UBERON_0000995 | |||||||||
| OBI:0002554 | vagina specimen | ready for release | A specimen that is derived from vagina. | Chris Stoeckert, NCI BBRB | Chris Stoeckert | equivalent | collecting specimen from organism | (tissue and ('part of' some vagina)) | UBERON_0000996 | |||||||||
| OBI:0002603 | areolar swab specimen | ready for release | A specimen that is collected with a swab from the surface of an areola of a breast. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | areola | UBERON_0002032 | |||||||||
| OBI:0002604 | breast swab specimen | ready for release | A specimen that is collected with a swab from the surface of a breast. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | breast | UBERON_0000310 | |||||||||
| OBI:0002605 | cheek swab specimen | ready for release | A specimen that is collected with a swab from the cheek portion of the inside surface of a mouth. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | cheek | UBERON_0001567 | |||||||||
| OBI:0002606 | nasopharyngeal swab specimen | ready for release | A specimen that is collected with a swab from the surface of a nasopharynx. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | nasopharynx | UBERON_0001728 | |||||||||
| OBI:0002607 | oral swab specimen | ready for release | A specimen that is collected with a swab from the inside surface of a mouth. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | mouth | UBERON_0000165 | |||||||||
| OBI:0002608 | oropharyngeal swab specimen | ready for release | A specimen that is collected with a swab from the surface of a oropharynx. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | oropharynx | UBERON_0001729 | |||||||||
| OBI:0002609 | rectal swab specimen | ready for release | A specimen that is collected with a swab from the surface of a rectum. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | rectum | UBERON_0001052 | |||||||||
| OBI:0002610 | tongue swab specimen | ready for release | A specimen that is collected with a swab from the surface of a tongue. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | tongue | UBERON_0001723 | |||||||||
| OBI:0002611 | vagina swab specimen | ready for release | A specimen that is collected with a swab from the surface of a vagina. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | vagina | UBERON_0000996 | |||||||||
| OBI:0002612 | fecal swab specimen | ready for release | stool swab specimen | A specimen that is collected with a swab from the surface of a feces. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | feces | UBERON_0001988 | ||||||||
| OBI:0002613 | environmental swab specimen | ready for release | A specimen that is collected with a swab from the surface of an environmenal material. | Chris Stoeckert, OBIB | Chris Stoeckert | equivalent | collecting specimen with swab | environmental material | ENVO_00010483 | |||||||||
| OBI:0002746 | induced sputum specimen | A sputum specimen that is collected from an organism following its inhalation of a nebulized salt solution. | PMC3297553 | John Judkins | subclass | collecting specimen from organism | sputum | UBERON_0007311 | ||||||||||
| OBI:0002778 | tracheal aspirate specimen | tracheal wash specimen | A specimen that is collected with a suctioning tube from the trachea. | PMID:25338241 | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | subclass | aspiration specimen collection | trachea | UBERON_0003126 | |||||||||
| OBI:0002779 | mid-turbinate nasal swab specimen | A specimen that is collected with a mid-turbinate nasal swab from the turbinate area of the nasal cavity. | https://seattlechildrenslab.testcatalog.org/catalogs/185/files/11633 | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | equivalent | collecting specimen with swab | middle nasal concha | UBERON_0005921 | ||||||||||
| OBI:0002780 | nasal aspirate specimen | nasal wash specimen|nasopharyngeal aspirate | A specimen that is collected with a suctioning tube from the nasal cavity. | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | equivalent | aspiration specimen collection | nasal cavity mucosa | UBERON_0001826 | |||||||||
| OBI:0002781 | lower respiratory tract aspirate specimen | lower respiratory tract wash specimen | A specimen that is collected with a suctioning tube from the lower respiratory tract. | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | equivalent | aspiration specimen collection | lower respiratory tract | UBERON_0001558 | |||||||||
| OBI:0002782 | upper respiratory specimen | A specimen that is derived from the upper respiratory tract | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | equivalent | collecting specimen with swab | upper respiratory tract | UBERON_0001557 | ||||||||||
| OBI:0002783 | lower respiratory tract specimen | A specimen that is derived from the lower respiratory tract. | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | equivalent | lower respiratory tract | UBERON_0001558 | |||||||||||
| OBI:0002784 | anterior nasal swab specimen | A specimen that is derived from the anterior nasal wall | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | Asiyah Yu Lin ORCID:0000-0003-2620-0345 | equivalent | collecting specimen with swab | anterior nasal wall | UBERON_3000016 | ||||||||||
| OBI:0002971 | endotracheal tube specimen | A specimen that derives from a biofilm that forms on the inner surface of an endotracheal tube while the tube is in the trachea. The specimen is collected upon removal of the tube from the trachea. | https://bmcpulmmed.biomedcentral.com/articles/10.1186/s12890-019-0926-3 | John Judkins ORCID:0000-0001-6595-0902 | subclass | collecting specimen from organism | respiratory system fluid/secretion | UBERON_0006538 | ||||||||||
| OBI:0002972 | endotracheal aspirate specimen | A specimen that derives from a biofilm that forms on the inner surface of an endotracheal tube while the tube is in the trachea. The specimen is collected by suction without removing the tube. | https://bmcpulmmed.biomedcentral.com/articles/10.1186/s12890-019-0926-3 | John Judkins ORCID:0000-0001-6595-0902 | subclass | collecting specimen from organism | respiratory system fluid/secretion | UBERON_0006538 | ||||||||||
| OBI:0003054 | blood specimen in vacutainer | Vacutainer sample | A blood specimen that is located in a vacutainer. | VEuPathDB | John Judkins | collecting specimen from organism | blood | UBERON_0000178 | ||||||||||
| OBI:0003055 | blood specimen on filter paper | Filter paper sample | A blood specimen that is located on a filter paper. | Penn Group | Jie Zheng|Chris Stoeckert | collecting specimen from organism | blood | UBERON_0000178 | ||||||||||
| OBI:0003380 | placental blood specimen | A specimen that is derived from placental blood. | VEuPathDB | John Judkins | equivalent | collecting specimen from organism | placental blood | UBERON_8470000 | ||||||||||
| OBI:0003415 | peripheral blood mononuclear cell specimen | PBMC specimen | A processed specimen that is extracted from whole blood using gradient centrifugation that separates the blood into a layer of peripheral blood mononuclear cells under the top layer of plasma. It contains lymphocytes, monocytes or macrophages that are critical components in the immune system. | http://en.wikipedia.org/wiki/Peripheral_blood_mononuclear_cell | Jie Zheng|Chris Stoeckert | subclass | collecting specimen from organism | peripheral blood mononuclear cell | CL_2000001 | |||||||||
| OBI:0003482 | lymph specimen | A specimen that is derived from a portion of lymph collected from an organism. | VEuPathDB | John Judkins ORCID:0000-0001-6595-0902 | collecting specimen from organism | (tissue and ('part of' some lymph)) | UBERON_0002391 | |||||||||||
| OBI:0003483 | digestive tract specimen | A specimen that is derived from part of a digestive tract. | VEuPathDB | John Judkins ORCID:0000-0001-6595-0902 | collecting specimen from organism | (tissue and ('part of' some 'digestive tract')) | UBERON_0001555 | |||||||||||
| OBI:0003595 | nasal lavage fluid | A specimen collected through nasal cavity lavage that contains the reagents used to for the lavage process, organisms, cells, cellular secretions, and other biomaterials present in the nasal cavity space. | Sebastian Duesing|Randi Vita | subclass | collecting specimen from organism | nasal cavity mucosa | UBERON_0001826 | |||||||||||
| OBI:2000000 | uterine cervix specimen | A specimen that is derived from some uterine cervix | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some 'uterine cervix')) | UBERON_0000002 | ||||||||||
| OBI:2000001 | urethra specimen | A specimen that is derived from some urethra | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some urethra)) | UBERON_0000057 | ||||||||||
| OBI:2000002 | cervical mucus specimen | A specimen that is derived from some cervical mucus | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | cervical mucus | UBERON_0000316 | ||||||||||
| OBI:2000003 | throat specimen | A specimen that is derived from some throat | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some throat)) | UBERON_0000341 | ||||||||||
| OBI:2000004 | eye specimen | A specimen that is derived from some eye | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some eye)) | UBERON_0000970 | ||||||||||
| OBI:2000005 | respiratory system specimen | A specimen that is derived from some respiratory system | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some 'respiratory system')) | UBERON_0001004 | ||||||||||
| OBI:2000006 | upper respiratory tract specimen | A specimen that is derived from some upper respiratory tract | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some 'upper respiratory tract')) | UBERON_0001557 | ||||||||||
| OBI:2000007 | nasopharynx specimen | A specimen that is derived from some nasopharynx | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some nasopharynx)) | UBERON_0001728 | ||||||||||
| OBI:2000008 | semen specimen | A specimen that is derived from some semen | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | semen | UBERON_0001968 | ||||||||||
| OBI:2000009 | bodily fluid specimen | A specimen that is derived from some bodily fluid | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | bodily fluid | UBERON_0006314 | ||||||||||
| OBI:2000010 | chorionic villus specimen | A specimen that is derived from some chorionic villus | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | (tissue and ('part of' some 'chorionic villus')) | UBERON_0007106 | ||||||||||
| OBI:2000011 | meconium specimen | A specimen that is derived from some meconium | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | meconium | UBERON_0007109 | ||||||||||
| OBI:2000012 | umbilical cord blood specimen | A specimen that is derived from some umbilical cord blood | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | umbilical cord blood | UBERON_0012168 | ||||||||||
| OBI:2000013 | arterial blood specimen | A specimen that is derived from some arterial blood | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | arterial blood | UBERON_0013755 | ||||||||||
| OBI:2000014 | venous blood specimen | A specimen that is derived from some venous blood | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | venous blood | UBERON_0013756 | ||||||||||
| OBI:2000015 | capillary blood specimen | A specimen that is derived from some capillary blood | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | equivalent | collecting specimen from organism | capillary blood | UBERON_0013757 | ||||||||||
| OBI:2000016 | erythrocyte specimen | A specimen that is derived from some erythrocytes | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | subclass | collecting specimen with swab | erythrocyte | CL_0000232 | ||||||||||
| OBI:2000017 | reticulocyte specimen | A specimen that is derived from some reticulocytes | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | subclass | collecting specimen with swab | reticulocyte | CL_0000558 | ||||||||||
| OBI:2000018 | leukocyte specimen | A specimen that is derived from some leukocytes | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | Mark A. Miller ORCID:0000-0001-9076-6066|Christian Stoeckert ORCID:0000-0002-5714-991X | subclass | collecting specimen with swab | leukocyte | CL_0000738 |
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