Created
November 27, 2012 16:27
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saves compressed numpy file for fast loading later
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import pandas, re, numpy as np | |
def load_file(filename, num_cols, dtypes, delimiter='\t'): | |
data = None | |
try: | |
data = np.fromfile(filename + '.npy', dtype=dtypes) | |
except: | |
splitter = re.compile(delimiter) | |
def items(infile): | |
for line in infile: | |
for item in splitter.split(line): | |
yield item | |
with open(filename, 'r') as infile: | |
data = np.fromiter(items(infile), dtypes, -1) | |
data = data.reshape((-1, num_cols)) | |
np.save(filename, data) | |
return pandas.DataFrame(data) | |
if __name__ == "__main__": | |
df = pd.read_csv('downsample.csv') | |
types = [] | |
for i in df.columns: | |
try: | |
i = float(i) | |
types.append(type(i)) | |
except ValueError: | |
types.append(type(i)) | |
dtypes = np.dtype([('feature_'+str(i),types[i]) for i in range(len(types))]) | |
load_file('kddcup.data',42, dtypes, delimiter=',') |
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