Patrick Reynolds cpatrick
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| r""" | |
| This module is a VTK Web server application. | |
| The following command line illustrate how to use it:: | |
| $ vtkpython .../vtk_web_cone.py | |
| Any VTK Web executable script come with a set of standard arguments that | |
| can be overriden if need be:: | |
| --port 8080 |
cpatrick
/ runsearch.py
Last active
October 3, 2021 15:18
Sample Python for running a full-text search using PyMongo
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| from pymongo import Connection | |
| if __name__ == '__main__': | |
| # Connect to mongo | |
| conn = Connection() | |
| db = conn['canepi'] | |
| # Set the search term | |
| term = 'foo' |
cpatrick
/ enable_index.js
Last active
December 18, 2015 03:29
Enabling Mongo full-text search and building an index.
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| // enable text search | |
| db.adminCommand( { setParameter : 1, textSearchEnabled : true } ) | |
| // build canepi-specific indices | |
| db.healthmap.ensureIndex({"properties.summary": "text", | |
| "properties.descr": "text", | |
| "properties.country": "text", | |
| "properties.disease": "text"}, | |
| { weights: { "properties.summary": 10, | |
| "properties.descr": 5, | |
| "properties.disease": 10, |
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| <html> | |
| <head> | |
| <title>HTML5 Folder Upload Test</title> | |
| </head> | |
| <body> | |
| <div id="container"> | |
| <input type="file" id="file_input" name="file_input_folder[]" | |
| multiple webkitdirectory="" mozdirectory="true" directory="" /> | |
| </div> | |
| <script src="http://code.jquery.com/jquery-1.9.1.min.js"></script> |
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| $ virtualenv boto-env | |
| $ source boto-env/bin/activate | |
| (boto-env) $ pip install boto |
cpatrick
/ reserve_server.py
Last active
December 11, 2015 05:39
Setting up a basic EC2 Instance with boto
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| from boto.ec2.connection import EC2Connection | |
| import secretkeys | |
| conn = EC2Connection(secretkeys.AWS_ACCESS_KEY, secretkeys.AWS_SECRET_KEY) | |
| security_description = 'Security rules for external servers' | |
| repo_sg = conn.create_security_group('external-server', security_description) | |
| repo_sg.authorize('tcp', 80, 80, '0.0.0.0/0') | |
| repo_sg.authorize('tcp', 22, 22, '0.0.0.0/0') | |
| repo_sg.authorize('tcp', 443, 443, '0.0.0.0/0') |
cpatrick
/ experiments.py
Created
December 12, 2012 22:36
Script for generating figures and exploring results for the purposes of my Multi-Velocity LDDMM final project for Comp 775 at UNC (Fall 2012).
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| import sh | |
| import gen | |
| from matplotlib import pyplot as plt | |
| import matplotlib.cm as cm | |
| import numpy as np | |
| import SimpleITK as sitk | |
| import sys | |
| lddmm_command = "/Users/cpatrick/calatk-build/CalaTK-Build/bin/LDDMM" | |
| apply_map_command = "/Users/cpatrick/calatk-build/CalaTK-Build/bin/applyMap" |
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| <?php | |
| /*========================================================================= | |
| MIDAS Server | |
| Copyright (c) Kitware SAS. 20 rue de la Villette. All rights reserved. | |
| 69328 Lyon, FRANCE. | |
| See Copyright.txt for details. | |
| This software is distributed WITHOUT ANY WARRANTY; without even | |
| the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| PURPOSE. See the above copyright notices for more information. |
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| <soapenv:Envelope xmlns:soapenv="http://schemas.xmlsoap.org/soap/envelope/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:wsa="http://schemas.xmlsoap.org/ws/2004/03/addressing"><soapenv:Header><wsa:MessageID soapenv:mustUnderstand="0">uuid:1757bde0-f7e2-11df-9ea4-e19bd0d21422</wsa:MessageID><wsa:Action soapenv:mustUnderstand="0">http://schemas.xmlsoap.org/ws/2004/03/addressing/fault</wsa:Action></soapenv:Header><soapenv:Body><soapenv:Fault><faultcode>soapenv:Server.userException</faultcode><faultstring>org.globus.wsrf.security.SecurityException: [SEC]Operation name could not be determined</faultstring><detail><ns1:stackTrace xmlns:ns1="http://xml.apache.org/axis/">org.globus.wsrf.security.SecurityException: [SEC]Operation name could not be determined | |
| at org.globus.wsrf.impl.security.util.AuthUtil.getOperationName(AuthUtil.java:259) | |
| at org.globus.wsrf.impl.security.authentication.AuthHandler.handle(AuthHandler.java:58) | |
| at org.globus.wsrf.impl.securi |