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Christopher Petersen cpetersen

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cpetersen / pubchem-download.rb
Created February 16, 2016 18:56
Download all of pubchem
require 'net/ftp'
Net::FTP.open('ftp.ncbi.nlm.nih.gov') do |ftp|
ftp.passive = true
ftp.login
ftp.chdir('/pubchem/Compound/CURRENT-Full/SDF')
files = ftp.list('*')
total = 0
sdf_files = files.select { |f| f.match(/\.sdf\.gz$/) }
sdf_files.each_with_index do |file, index|
@cpetersen
cpetersen / dash-to-quiver.rb
Created February 10, 2016 19:29
This gist converts your Dash Snippets to a Quiver Notebook. Assumes you Snippets.dash file is in the same directory and produces a Snippets.qvnotebook directory that can be imported into Quiver.
require "json"
require "sqlite3"
require "fileutils"
notebook_name = "Snippets.qvnotebook"
notebook_uuid = SecureRandom.uuid
FileUtils::mkdir_p(notebook_name)
notebook_meta = {
name: "Imported from Dash",
uuid: notebook_uuid
@cpetersen
cpetersen / bad_json.json
Created March 9, 2015 22:51
Bad JSON for testing
[{"name":"Winnifred Legros","email":"[email protected]","company":"Howell-Rempel","credit_card_number":"1212-1221-1121-1234","color":"mint green"},{"name":"Sincere Fritsch","email":"[email protected]","company":"Bahringer and Sons","credit_card_number":"1228-1221-1221-1431","color":"lavender"},{"name":"Anya Ruecker","email":"[email protected]","company":"Sporer and Sons","credit_card_number":"1212-1221-1121-1234","color":"violet"},{"name":"Cicero Funk","email":"[email protected]","company":"Feeney, Auer and Schuster","credit_card_number":"1211-1221-1234-2201","color":"lavender"},{"name":"Alessandro Mertz","email":"[email protected]","company":"Schowalter and Sons","credit_card_number":"1211-1221-1234-2201","color":"salmon"
@cpetersen
cpetersen / fake.json
Created March 6, 2015 23:44
Fake Data
[{"name":"Winnifred Legros","email":"[email protected]","company":"Howell-Rempel","credit_card_number":"1212-1221-1121-1234","color":"mint green"},{"name":"Sincere Fritsch","email":"[email protected]","company":"Bahringer and Sons","credit_card_number":"1228-1221-1221-1431","color":"lavender"},{"name":"Anya Ruecker","email":"[email protected]","company":"Sporer and Sons","credit_card_number":"1212-1221-1121-1234","color":"violet"},{"name":"Cicero Funk","email":"[email protected]","company":"Feeney, Auer and Schuster","credit_card_number":"1211-1221-1234-2201","color":"lavender"},{"name":"Alessandro Mertz","email":"[email protected]","company":"Schowalter and Sons","credit_card_number":"1211-1221-1234-2201","color":"salmon"}]
@cpetersen
cpetersen / fake.csv
Created March 6, 2015 23:29
Fake Data
Fake Name Fake Email Fake Company Fake Credit Card Fake Favorite Color
Dena Auer [email protected] Ward Group 1211-1221-1234-2201 purple
Rosalyn Jast [email protected] Wyman, Hartmann and Bradtke 1228-1221-1221-1431 grey
Lavada Klein [email protected] Thompson Inc 1228-1221-1221-1431 salmon
Hailee Green [email protected] Feest-Hilpert 1212-1221-1121-1234 silver
Lula Orn [email protected] Bartell, Batz and Bosco 1234-2121-1221-1211 blue
Eloisa Sauer [email protected] Lemke-Robel 1228-1221-1221-1431 green
Mose Dietrich MD [email protected] Wuckert Group 1212-1221-1121-1234 plum
Elijah Cronin [email protected] Schroeder and Sons 1228-1221-1221-1431 black
Icie McLaughlin [email protected] Kozey, Hudson and Carter 1228-1221-1221-1431 red
@cpetersen
cpetersen / fake-users.csv
Created December 3, 2014 17:28
Fake Users for testing a gem
Name Email Street City State Zip
Haleigh Koelpin [email protected] 34073 Faustino Light Kochstad Arizona 96968-3886
Demond Roberts I [email protected] 19972 Schaden Extension West Annabelstad Michigan 85342-1191
Danial Buckridge [email protected] 6470 Raegan Expressway Zboncakstad Kentucky 58653
Eliseo Feil II [email protected] 26890 Robert Summit Stanport Wisconsin 73088-9082
Brant Torp V [email protected] 3645 Brooklyn Glens Kreigerport Maine 81575-6434
Elody Marquardt [email protected] 768 Mariane Burgs West Henrifort Texas 70741
Melissa Kulas [email protected] 50130 Buster Pines Streichhaven Hawaii 16828
Noble Howe III [email protected] 382 Stephon Island West Shayna Rhode Island 65108-4692
Chesley Collins [email protected] 2587 Carter Extension Maryberg Arizona 17601-3109
@cpetersen
cpetersen / gist:10946319
Created April 17, 2014 01:09
### Keybase proof
I hereby claim:
* I am cpetersen on github.
* I am cpetersen (https://keybase.io/cpetersen) on keybase.
* I have a public key whose fingerprint is 57A4 66F6 482D 4152 D008 B5A2 1DC7 758F 29F6 DD77
To claim this, I am signing this object:
@cpetersen
cpetersen / stats.rb
Created January 14, 2014 00:03
Grubb's outlier test for Ruby
module Enumerable
def sum
self.inject(0){|accum, i| accum + i }
end
def mean
self.sum/self.length.to_f
end
def sample_variance
@cpetersen
cpetersen / delete_conflicted_wares.rb
Created July 9, 2013 19:55
This code looks for wares that originate at central and have a ```promo_image```, these have likely been conflicted due to a bad migration. We then store them in JSON files on disk and delete them. Replication will then recreate them in an unconflicted state. This will not be run on central.
include FileUtils
directory = File.join(ENV['HOME'], "ware_backups")
FileUtils.mkdir_p(directory)
wares = []
Ware.in_groups do |ware|
if(ware.promo_image.present? && ware.replication_permissions["central"] == "origin")
wares << ware
File.open(File.join(directory, "#{ware.id}.json"), "w") { |file| file.write ware.as_json }
@cpetersen
cpetersen / unicorn.god
Created July 3, 2013 18:44
Unicorn God config (based on GitHub's)
# http://unicorn.bogomips.org/SIGNALS.html
rails_env = ENV['RAILS_ENV'] || 'production'
rails_root = ENV['RAILS_ROOT'] || "/u/apps/cilantro/current"
God.watch do |w|
w.name = "unicorn"
w.interval = 30.seconds # default
# unicorn needs to be run from the rails root