Created
October 13, 2011 16:39
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cufflinks compile
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(09:34:56) cwebber@biocluster [~/src/cufflinks-1.1.0] ./configure --prefix=/home/cwebber/cufflinks-1.1.0 | |
checking for a BSD-compatible install... /usr/bin/install -c | |
checking whether build environment is sane... yes | |
checking for gawk... gawk | |
checking whether make sets $(MAKE)... yes | |
checking for gawk... (cached) gawk | |
checking for g++... g++ | |
checking for C++ compiler default output file name... a.out | |
checking whether the C++ compiler works... yes | |
checking whether we are cross compiling... no | |
checking for suffix of executables... | |
checking for suffix of object files... o | |
checking whether we are using the GNU C++ compiler... yes | |
checking whether g++ accepts -g... yes | |
checking for style of include used by make... GNU | |
checking dependency style of g++... gcc3 | |
checking for gcc... gcc | |
checking whether we are using the GNU C compiler... yes | |
checking whether gcc accepts -g... yes | |
checking for gcc option to accept ANSI C... none needed | |
checking dependency style of gcc... gcc3 | |
checking whether make sets $(MAKE)... (cached) yes | |
checking for ranlib... ranlib | |
checking for a BSD-compatible install... /usr/bin/install -c | |
checking for a Python interpreter with version >= 2.4... python | |
checking for python... /usr/bin/python | |
checking for python version... 2.6 | |
checking for python platform... linux2 | |
checking for python script directory... ${prefix}/lib/python2.6/site-packages | |
checking for python extension module directory... ${exec_prefix}/lib/python2.6/site-packages | |
checking for boostlib >= 1.38.0... yes | |
checking for bamlib... configure: error: We could not detect the bam libraries (version or higher). If you have a staged bam library (still not installed) please specify $BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation. | |
(09:35:24) cwebber@biocluster [~/src/cufflinks-1.1.0] |
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