phenotype resolver

pheno.go

package main

import (
	"context"
	"fmt"

	"github.com/dictyBase/go-genproto/dictybaseapis/annotation"
)

func (r *StrainResolver) Phenotypes(ctx context.Context, obj *models.Strain) ([]*models.Phenotype, error) {
	p := []*models.Phenotype{}
	strainId := obj.Data.Id
	gc, err := r.AnnotationClient.ListAnnotationGroups(
		context.Background(),
		&annotation.ListGroupParameters{
			Filter: fmt.Sprintf(
				"entry_id==%s;ontology==%s",
				strainId,
				phenoOntology,
			),
			Limit: 30,
		})
	if err != nil {
		errorutils.AddGQLError(ctx, err)
		r.Logger.Error(err)
		return p, err
	}
	for _, item := range gc.Data {
		m := &models.Phenotype{}
		for _, g := range item.Group.Data {
			switch g.Attributes.Ontology {
			case phenoOntology:
				m.Phenotype = g.Attributes.Tag
			case envOntology:
				m.Environment = g.Attributes.Tag
			case assayOntology:
				m.Assay = g.Attributes.Assay
			case literatureTag:
				pub, err := utils.FetchPublication(ctx, g.Attributes.Value)
				if err != nil {
					errorutils.AddGQLError(ctx, err)
					r.Logger.Error(err)
				}
				m.Pub = pub
			case noteTag:
				m.Note = g.Attributes.Value
			}
		}
		p = append(p, m)
	}
	return p, nil
}