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Extract articles that cite CeNDR; The C. elegans natural diversity resource
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| import scholarly | |
| search_results = scholarly.search_pubs_query("CeNDR") | |
| top = next(search_results) | |
| assert top.bib["title"] == "CeNDR, the Caenorhabditis elegans natural diversity resource" | |
| citations = list(top.get_citedby()) | |
| for i in citations: | |
| print("\t".join(i.bib["title"], i.bib["author"], i.bib.get("eprint"))] | |
| import pandas as pd | |
| df = pd.DataFrame.from_dict([x.__dict__ for x in citations]) | |
| bibs = pd.DataFrame.from_dict(list(df.bib.values)) | |
| del df["bib"] | |
| # Combine | |
| df = pd.concat([df, bibs], axis=1) | |
| # Write out | |
| df.to_csv("pubs.tsv", sep="\t") |
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Learn more about bidirectional Unicode characters
| WormBase 2017: molting into a new stage | |
| RYN Lee and KL Howe and TW Harris and V Arnaboldi… | |
| https://academic.oup.com/nar/article/46/D1/D869/4563314 | |
| Regulatory changes in two chemoreceptor genes contribute to a Caenorhabditis elegans QTL for foraging behavior | |
| JS Greene and M Dobosiewicz and RA Butcher and PT McGrath… | |
| https://cdn.elifesciences.org/articles/21454/elife-21454-v1.pdf | |
| A maternal-effect selfish genetic element in Caenorhabditis elegans | |
| E Ben-David and A Burga and L Kruglyak | |
| https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251971/ | |
| Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons | |
| S Zdraljevic and C Strand and HS Seidel and DE Cook… | |
| https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006891 | |
| Polygenicity and epistasis underlie fitness-proximal traits in the Caenorhabditis elegans multiparental experimental evolution (CeMEE) panel | |
| LM Noble and I Chelo and T Guzella and B Afonso… | |
| https://www.genetics.org/content/genetics/207/4/1663.full.pdf | |
| The genetic basis of natural variation in a phoretic behavior | |
| D Lee and H Yang and J Kim and S Brady and S Zdraljevic… | |
| https://www.nature.com/articles/s41467-017-00386-x | |
| Correlations of genotype with climate parameters suggest Caenorhabditis elegans niche adaptations | |
| KS Evans and Y Zhao and SC Brady and L Long… | |
| https://www.g3journal.org/content/ggg/7/1/289.full.pdf | |
| Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species | |
| KM Laricchia and S Zdraljevic and DE Cook… | |
| https://academic.oup.com/mbe/article/34/9/2187/3806756 | |
| An integrated systems genetics and omics toolkit to probe gene function | |
| H Li and X Wang and D Rukina and Q Huang and T Lin and V Sorrentino… | |
| https://www.sciencedirect.com/science/article/pii/S2405471217304866 | |
| Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms | |
| S Zdraljevic and EC Andersen | |
| https://www.sciencedirect.com/science/article/pii/S0959437X17300539 | |
| An open-source platform for analyzing and sharing worm-behavior data | |
| A Javer and M Currie and CW Lee and J Hokanson and K Li… | |
| https://europepmc.org/articles/pmc6284784 | |
| Extreme allelic heterogeneity at a Caenorhabditis elegans beta-tubulin locus explains natural resistance to benzimidazoles | |
| SR Hahnel and S Zdraljevic and BC Rodriguez and Y Zhao… | |
| https://journals.plos.org/plospathogens/article?rev=1&id=10.1371/journal.ppat.1007226 | |
| Changes to social feeding behaviors are not sufficient for fitness gains of the Caenorhabditis elegans N2 reference strain | |
| Y Zhao and L Long and W Xu and RF Campbell and EE Large… | |
| https://cdn.elifesciences.org/articles/38675/elife-38675-v2.pdf | |
| Shared genomic regions underlie natural variation in diverse toxin responses | |
| KS Evans and SC Brady and JS Bloom and RE Tanny… | |
| https://www.genetics.org/content/genetics/210/4/1509.full.pdf | |
| Hawaiian Drosophila as an evolutionary model clade: days of future past | |
| P O'Grady and R DeSalle | |
| https://www.drosophilaevolution.com/uploads/6/6/8/3/6683664/100.pdf | |
| Linking genomic and metabolomic natural variation uncovers nematode pheromone biosynthesis | |
| JM Falcke and N Bose and AB Artyukhin and C Rödelsperger… | |
| https://www.sciencedirect.com/science/article/pii/S2451945618301181 | |
| MIP-MAP: high-throughput mapping of Caenorhabditis elegans temperature-sensitive mutants via molecular inversion probes | |
| CA Mok and V Au and OA Thompson and ML Edgley… | |
| https://www.genetics.org/content/genetics/207/2/447.full.pdf | |
| Genome-wide approaches to investigate anthelmintic resistance | |
| SR Doyle and JA Cotton | |
| None | |
| Natural variation in C. elegans arsenic toxicity is explained by differences in branched chain amino acid metabolism | |
| S Zdraljevic and BW Fox and C Strand and O Panda and FJ Tenjo… | |
| https://cdn.elifesciences.org/articles/40260/elife-40260-v1.pdf | |
| Comparative genomics of 10 new Caenorhabditis species | |
| L Stevens and MA Félix and T Beltran and C Braendle… | |
| https://onlinelibrary.wiley.com/doi/pdf/10.1002/evl3.110 | |
| Natural genetic variation in a multigenerational phenotype in C. elegans | |
| L Frézal and E Demoinet and C Braendle and E Miska and MA Félix | |
| https://www.sciencedirect.com/science/article/pii/S0960982218307619 | |
| From “the worm” to “the worms” and back again: the evolutionary developmental biology of nematodes | |
| ES Haag and DHA Fitch and M Delattre | |
| https://www.genetics.org/content/genetics/210/2/397.full.pdf | |
| Comparative epigenomics reveals that RNA polymerase II pausing and chromatin domain organization control nematode piRNA biogenesis | |
| T Beltran and C Barroso and TY Birkle and L Stevens… | |
| https://www.sciencedirect.com/science/article/pii/S1534580718311262 | |
| Why do individuals differ in viral susceptibility? A story told by model organisms | |
| L van Sluijs and G Pijlman and J Kammenga | |
| https://www.mdpi.com/1999-4915/9/10/284/pdf | |
| Caenorhabditis elegans as an emerging model system in environmental epigenetics | |
| C Weinhouse and L Truong and JN Meyer… | |
| https://europepmc.org/articles/pmc6113102 | |
| A natural variant and engineered mutation in a GPCR promote DEET resistance in C. elegans | |
| EJ Dennis and M Dobosiewicz and X Jin and LB Duvall… | |
| https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6386462/ | |
| The Rôle Of Eyestrain In Civilization | |
| GM Gould | |
| https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2514210/pdf/brmedj08266-0027.pdf | |
| Transcriptional variation and divergence of host-finding behaviour in Steinernema carpocapsae infective juveniles | |
| ND Warnock and D Cox and C McCoy and R Morris and JJ Dalzell | |
| https://www.biorxiv.org/content/biorxiv/early/2018/03/03/272641.full.pdf | |
| Laboratory evolution from social to solitary behavior in the N2 reference strain is unnecessary for its fitness advantages | |
| Y Zhao and L Long and W Xu and RF Campbell and EL Large… | |
| https://www.biorxiv.org/content/biorxiv/early/2018/04/30/309997.full.pdf | |
| Evolutionary analysis implicates RNA polymerase II pausing and chromatin structure in nematode piRNA biogenesis | |
| T Beltran and C Barruso and T Birkle and L Stevens and HT Schwartz… | |
| https://www.biorxiv.org/content/biorxiv/early/2018/03/13/281360.full.pdf | |
| Common genomic regions underlie natural variation in diverse toxin responses | |
| S Brady and K Evans and J Bloom and R Tanny and D Cook… | |
| https://www.biorxiv.org/content/biorxiv/early/2018/08/21/325399.full.pdf | |
| Characterization and Applications of Natural Variation in C. elegans | |
| DE Cook | |
| None | |
| Natural variation in arsenic toxicity is explained by differences in branched chain amino acid catabolism | |
| S Zdraljevic and BW Fox and C Strand and O Panda… | |
| https://www.biorxiv.org/content/biorxiv/early/2019/02/07/373787.full.pdf | |
| A Model for Evolutionary Ecology of Disease: The Case for Caenorhabditis Nematodes and Their Natural Parasites | |
| AK Gibson and LT Morran | |
| https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5770282/ | |
| A nematode-specific gene underlies bleomycin-response variation in Caenorhabditis elegans | |
| SC Brady and S Zdraljevic and K Bisaga and R Tanny and DE Cook… | |
| https://www.biorxiv.org/content/biorxiv/early/2019/05/14/565218.full.pdf | |
| A Genome-Scale Analysis of Alternative Splicing Regulation by Splicing Factors in C. elegans | |
| JHJ Tan | |
| https://tspace.library.utoronto.ca/bitstream/1807/91985/2/Tan_June_H_201811_PhD_thesis.pdf | |
| A maternal-effect genetic incompatibility in Caenorhabditis elegans | |
| E Ben-David and A Burga and L Kruglyak | |
| https://www.biorxiv.org/content/biorxiv/early/2017/02/28/112524.full.pdf | |
| Natural Variation and Genetic Determinants of Caenorhabditis elegans Sperm Size | |
| C Gimond and A Vielle and N Silva-Soares and S Zdraljevic… | |
| None | |
| Establishing Heritability for Value Based Decision Making Qualities in Anandamide treated Caenorhabditis Elegans Natural Isolate Strains | |
| HZ Purcell | |
| https://scholarsbank.uoregon.edu/xmlui/bitstream/handle/1794/24071/Final%20Thesis-Purcell.pdf?sequence=1 | |
| Adult-specific pheromones differently influence malthusian escape strategies of younger generations | |
| MS Werner and M Claassen and T Renahan and M Dardiry… | |
| https://www.biorxiv.org/content/biorxiv/early/2018/09/24/291591.full.pdf | |
| Reciprocal requirement of Wnt signaling and SKN-1 underlies cryptic intraspecies variation in an ancient embryonic gene regulatory network | |
| YNT Cleuren and CK Ewe and KC Chipman and E Mears… | |
| https://www.biorxiv.org/content/biorxiv/early/2019/05/12/628495.full.pdf | |
| Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans | |
| C Kim and J Kim and S Kim and DE Cook and KS Evans… | |
| http://genome.cshlp.org/content/29/6/1023.full.pdf | |
| A new reference genome sequence for Caenorhabditis elegans? | |
| KL Howe | |
| None | |
| Natural variation in a single amino acid underlies cellular responses to topoisomerase II poisons | |
| S Zdraljevic and C Strand and HS Seidel and DE Cook… | |
| https://www.biorxiv.org/content/biorxiv/early/2017/04/07/125567.full.pdf | |
| A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans | |
| SC Brady and S Zdraljevic and KW Bisaga and RE Tanny… | |
| https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6707474/ | |
| Gene-level quantitative trait mapping in an expanded C. elegans multiparent experimental evolution panel | |
| LM Noble and MV Rockman and H Teotonio | |
| https://www.biorxiv.org/content/biorxiv/early/2019/03/26/589432.full.pdf | |
| Recompleting the Caenorhabditis elegans genome | |
| J Yoshimura and K Ichikawa and MJ Shoura and KL Artiles… | |
| http://genome.cshlp.org/content/29/6/1009.full.pdf | |
| Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations | |
| TA Crombie and S Zdraljevic and DE Cook and RE Tanny… | |
| https://www.biorxiv.org/content/biorxiv/early/2019/07/28/716928.full.pdf | |
| Quantitative UV Sensitivity Assay and Whole Genome Extractionfor DNA Methylation Analysis in Dictyostelium discoideum | |
| JKS Denis | |
| None | |
| Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory network | |
| YNT Cleuren and CK Ewe and KC Chipman and E Mears… | |
| https://www.biorxiv.org/content/10.1101/628495v3.full-text | |
| Tightly-linked antagonistic-effect loci underlie polygenic demographic variation in C. elegans | |
| MR Bernstein and S Zdraljevic and EC Andersen… | |
| https://www.biorxiv.org/content/biorxiv/early/2018/09/27/428466.full.pdf | |
| Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk | |
| A Burga and E Ben-David and TL Vergara and J Boocock… | |
| https://www.nature.com/articles/s41467-019-10636-9 | |
| Why do Individuals Differ in Viral Susceptibility? A Story Told by Model Organisms. | |
| GP Pijlman and JE Kammenga | |
| https://europepmc.org/articles/pmc5691635 | |
| Population selection and sequencing of C. elegans wild isolates identifies a region on chromosome III affecting starvation resistance | |
| AK Webster and A Hung and BT Moore and R Guzman and JM Jordan… | |
| https://www.biorxiv.org/content/biorxiv/early/2019/05/11/635417.full.pdf | |
| Adult influence on juvenile phenotypes by stage-specific pheromone production | |
| MS Werner and MH Claaßen and T Renahan and M Dardiry… | |
| https://www.sciencedirect.com/science/article/pii/S2589004218302177 | |
| Identification of C. elegans strains using a fully convolutional neural network on behavioural dynamics | |
| A Javer and AEX Brown and I Kokkinos… | |
| http://openaccess.thecvf.com/content_ECCVW_2018/papers/11134/Javer_Identification_of_it_C._elegans_strains_using_a_fully_convolutional_ECCVW_2018_paper.pdf | |
| An analysis of intrinsic base substitution patterns in diverse species reveals connections to cancer and metabolism | |
| K Chan and KN Doherty and S Alasmar | |
| https://www.biorxiv.org/content/biorxiv/early/2019/09/08/758540.full.pdf | |
| Proteomic and evolutionary analyses of sperm activation identify uncharacterized genes in Caenorhabditis nematodes | |
| KR Kasimatis… | |
| https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4980-7 | |
| A vital dye method in nematodes reveals age is a critical parameter in density-dependent plasticity | |
| MS Werner and MH Claaßen and T Renahan and M Dardiry… | |
| https://www.biorxiv.org/content/10.1101/291591v2.full | |
| WormBase 2017: Molting into a new stage | |
| T Schedl | |
| https://digitalcommons.wustl.edu/cgi/viewcontent.cgi?article=7537&context=open_access_pubs | |
| Evolution of sperm competition: Natural variation and genetic determinants of Caenorhabditis elegans sperm size | |
| C Gimond and A Vielle and NS Soares and S Zdraljevic… | |
| https://www.biorxiv.org/content/biorxiv/early/2018/12/19/501486.full.pdf | |
| Defects in mating behavior are the primary cause of sterility in C. elegans males at elevated temperature | |
| EM Nett and NB Sepulveda and LN Petrella | |
| https://www.biorxiv.org/content/biorxiv/early/2019/05/31/655027.full.pdf | |
| Detection of Volatile Compounds Secreted by Mycobacteriumtuberculosis Using Caenorhabditis elegans | |
| S Aldakeel | |
| None | |
| Selection and gene flow shape niche-associated copy-number variation of pheromone receptor genes | |
| EC Andersen | |
| http://andersenlab.org/publications/2019LeeZdraljevicBioRxiv.pdf | |
| Balancing selection shapes the Intracellular Pathogen Response in natural Caenorhabditis elegans populations | |
| L Van Sluijs and KJ Bosman and F Pankok and T Blokhina… | |
| https://www.biorxiv.org/content/biorxiv/early/2019/03/23/579151.full.pdf | |
| Selection and gene flow shape niche-associated copy-number variation of pheromone receptor genes | |
| D Lee and S Zdraljevic and DE Cook and L Frézal and JC Hsu… | |
| https://www.biorxiv.org/content/biorxiv/early/2019/03/26/580803.full.pdf |
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