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August 15, 2020 14:14
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Check integrity of BAMs
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| function check_bam { | |
| samtools quickcheck ${1} | |
| if [ $? -ne "0" ]; then | |
| echo ${1} | |
| fi | |
| } | |
| export -f check_bam | |
| parallel check_bam ::: *.bam |
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