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February 21, 2019 00:18
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Compare hashes of bam files
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| function samtools_md5() { | |
| md5=`samtools view ${1} | tr '\t' '\n' | sort | md5sum` | |
| echo -e "${md5}\t${1}" | |
| } | |
| export -f samtools_md5 | |
| parallel --verbose -j 10 samtools_md5 {} ::: `ls *.bam` > hashes.txt | |
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