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danielepolencic/workflow.md

Last active April 24, 2022 18:13
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Existing Workflow systems
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workflow.md

See also: https://github.com/pditommaso/awesome-pipeline

@jsmedmar
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We need to add toil to this list! https://github.com/DataBiosphere/toil

@jsmedmar
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For anyone landing here, check another list of workflow tools: https://github.com/pditommaso/awesome-pipeline

@jsmedmar
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A larger list: https://github.com/common-workflow-language/common-workflow-language/wiki/Existing-Workflow-systems

@Celso0408
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There is another tool to add to your list!
https://simstack.readthedocs.io/en/latest/

The SimStack workflow framework is based on a client-server concept connected via the secure shell (SSH) protocol. The end-user designs and sets up the workflow within the SimStack client on a local machine. The workflow and all required input are transferred to the HPC resource via SSH upon submission. The SimStack server process on the HPC resource subsequently generates a single job for each step of the workflow and manages the execution of these jobs through the local scheduling software.

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