TensorFlow Variational Auto-Encoder

blog_tensorflow_variational_auto_encoder.py

# Full example for my blog post at:
# https://danijar.com/building-variational-auto-encoders-in-tensorflow/

import numpy as np
import matplotlib.pyplot as plt
import tensorflow as tf
from tensorflow.examples.tutorials.mnist import input_data

tfd = tf.contrib.distributions


def make_encoder(data, code_size):
  x = tf.layers.flatten(data)
  x = tf.layers.dense(x, 200, tf.nn.relu)
  x = tf.layers.dense(x, 200, tf.nn.relu)
  loc = tf.layers.dense(x, code_size)
  scale = tf.layers.dense(x, code_size, tf.nn.softplus)
  return tfd.MultivariateNormalDiag(loc, scale)


def make_prior(code_size):
  loc = tf.zeros(code_size)
  scale = tf.ones(code_size)
  return tfd.MultivariateNormalDiag(loc, scale)


def make_decoder(code, data_shape):
  x = code
  x = tf.layers.dense(x, 200, tf.nn.relu)
  x = tf.layers.dense(x, 200, tf.nn.relu)
  logit = tf.layers.dense(x, np.prod(data_shape))
  logit = tf.reshape(logit, [-1] + data_shape)
  return tfd.Independent(tfd.Bernoulli(logit), 2)


def plot_codes(ax, codes, labels):
  ax.scatter(codes[:, 0], codes[:, 1], s=2, c=labels, alpha=0.1)
  ax.set_aspect('equal')
  ax.set_xlim(codes.min() - .1, codes.max() + .1)
  ax.set_ylim(codes.min() - .1, codes.max() + .1)
  ax.tick_params(
      axis='both', which='both', left='off', bottom='off',
      labelleft='off', labelbottom='off')


def plot_samples(ax, samples):
  for index, sample in enumerate(samples):
    ax[index].imshow(sample, cmap='gray')
    ax[index].axis('off')


data = tf.placeholder(tf.float32, [None, 28, 28])

make_encoder = tf.make_template('encoder', make_encoder)
make_decoder = tf.make_template('decoder', make_decoder)

# Define the model.
prior = make_prior(code_size=2)
posterior = make_encoder(data, code_size=2)
code = posterior.sample()

# Define the loss.
likelihood = make_decoder(code, [28, 28]).log_prob(data)
divergence = tfd.kl_divergence(posterior, prior)
elbo = tf.reduce_mean(likelihood - divergence)
optimize = tf.train.AdamOptimizer(0.001).minimize(-elbo)

samples = make_decoder(prior.sample(10), [28, 28]).mean()

mnist = input_data.read_data_sets('MNIST_data/')
fig, ax = plt.subplots(nrows=20, ncols=11, figsize=(10, 20))
with tf.train.MonitoredSession() as sess:
  for epoch in range(20):
    feed = {data: mnist.test.images.reshape([-1, 28, 28])}
    test_elbo, test_codes, test_samples = sess.run([elbo, code, samples], feed)
    print('Epoch', epoch, 'elbo', test_elbo)
    ax[epoch, 0].set_ylabel('Epoch {}'.format(epoch))
    plot_codes(ax[epoch, 0], test_codes, mnist.test.labels)
    plot_samples(ax[epoch, 1:], test_samples)
    for _ in range(600):
      feed = {data: mnist.train.next_batch(100)[0].reshape([-1, 28, 28])}
      sess.run(optimize, feed)
plt.savefig('vae-mnist.png', dpi=300, transparent=True, bbox_inches='tight')

... colab? (wink wink)

Colab! https://colab.research.google.com/notebook#fileId=1Wl78KHPzQ2Q253Rob5W1o0bd8nu9DZel

It seems like the line

samples = make_decoder(prior.sample(10), [28, 28]).mean()

needs to be replaced with:

samples = make_decoder(prior.sample((10,1)), [28, 28]).mean()

otherwise it won't run (i.e. in colab).

Hi, I am getting
InvalidArgumentError (see above for traceback): Matrix size-incompatible: In[0]: [2,10], In[1]: [2,200]
the second time it calls make_decoder.
I use tensorflow (and tensorflow-gpu), both version 1.9.0

Thanks,
-Silvija

Just an update: when I applied the modification that @kpe suggested everything worked fine. Thanks!

Thank you for the tutorial. I changed the code size to 4, but the code is not working. It just work with code size 2.

Thanks. Your code is very helpful!
But I have a question. Are you implementing the exact algorithm in "Auto-Encoding Variational Bayes"? Since in that paper, it use MLP to construct the encoder and decoder, which I think in the "make_encoder" function, the activation function of first layer should be tanh, but not relu. And it is the same for the "make_decoder" function.