Dan LaManna danlamanna

The way to ingest activities is to take the relevant json files from the m1-annotations repo and run a python script over them that uploads them to Stumpf.

To set this up on your machine you need a few things:

Python and pip (if running the command 'pip' or 'python -m pip' prints the help page, you're good)
The m1-annotations repo
Typically you'll want to be on the latest version of master without uncommitted changes, since the files are going from your computer to Stumpf.

	#!/usr/bin/env bash
	set -euo pipefail

	MERGE_WHEN_CHECKS_PASS=0
	VIEW_IN_WEB=0

	if ! [ -x "$(command -v gh)" ]; then
	echo 'Error: gh is not installed.' >&2
	exit 1
	fi

	Transactions: 15130 hits
	Availability: 100.00 %
	Elapsed time: 29.31 secs
	Data transferred: 11.62 MB
	Response time: 0.13 secs
	Transaction rate: 516.21 trans/sec
	Throughput: 0.40 MB/sec
	Concurrency: 68.93
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	Failed transactions: 0

	FROM ubuntu:14.04

	RUN apt-get update && apt-get upgrade -y
	RUN apt-get install -y libprotobuf-dev libleveldb-dev libsnappy-dev libopencv-dev \
	libhdf5-serial-dev protobuf-compiler libatlas-base-dev python-dev cmake git \
	autotools-dev automake && apt-get install -y --no-install-recommends libboost-all-dev libboost-python1.55.0
	RUN apt-get install -y python-pip
	RUN pip install -U pip
	RUN pip install numpy scikit-image protobuf
	RUN apt-get install -y ruby ruby-dev gcc make

	#!/bin/bash
	set -e

	. /usr/bin/virtualenvwrapper.sh

	BASE_PATH="$HOME/projects/girder/prs"
	GIRDER_GITHUB_URL="https://github.com/girder/girder"

	readonly VENV_PREFIX="girder"
	readonly PR="$1"

	<Taylors1Swiftie> Picture: Brightness - 45, Contrast - 50, LBL - 0,
	Blur Reduc - off, Color Temp - user mode
	<Taylors1Swiftie> Pic Advanced: Pic MOde - standard, Display Mode -
	Full, Smart Focus Size - off
	<Taylors1Swiftie> user mode colors - 96R, 96G,97B
	<Taylors1Swiftie> Picture: Reset Color - no, AMA - high, Instant Mode
	- on, Sharpness - 5, Gamma - gamma 3
	> nvidia settings?
	<Taylors1Swiftie> brightness 50 contrast 50 gamma .8 digital vibrance
	50 hue 0

	<?xml version="1.0" encoding="UTF-8"?>
	<Site BuildName="ansible-tests-master"
	BuildStamp="20160923-0500-Nightly"
	Name="genii.kitware"
	Generator="ctest-3.5.20160329-gb076d"
	CompilerName=""
	CompilerVersion=""
	OSName="Linux"
	Hostname="genii"
	OSRelease="4.6.7-300.fc24.x86_64"

	npm WARN deprecated [email protected]: Please update to minimatch 3.0.2 or higher to avoid a RegExp DoS issue
	npm WARN peerDependencies The peer dependency [email protected] included from grunt-webpack will no
	npm WARN peerDependencies longer be automatically installed to fulfill the peerDependency
	npm WARN peerDependencies in npm 3+. Your application will need to depend on it explicitly.
	npm WARN peerDependencies The peer dependency [email protected] included from grunt-webpack will no
	npm WARN peerDependencies longer be automatically installed to fulfill the peerDependency
	npm WARN peerDependencies in npm 3+. Your application will need to depend on it explicitly.
	npm WARN deprecated [email protected]: ReDoS vulnerability parsing Set-Cookie https://nodesecurity.io/advisories/130
	npm WARN deprecated [email protected]: graceful-fs v3.0.0 and before will fail on node releases >= v7.0. Please update to graceful-fs@^4.0.0 as soon as possible. Use 'npm ls graceful-fs' to find it in the tree.
	npm WARN deprecated m

	file(STRINGS "${CTEST_BINARY_DIRECTORY}/Testing/TAG" tag_info)
	list(GET tag_info 0 tag_info)
	list(APPEND CTEST_NOTES_FILES
	"${CTEST_BINARY_DIRECTORY}/Testing/Temporary/LastTest_${tag_info}.log")
	ctest_submit(PARTS Notes)