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@dansondergaard
Last active July 27, 2021 07:09
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Package names from bio.tools and various conda channels (anaconda, conda-forge, bioconda, r).
KNIME - Cellular phenotyping
Galaxy Image Analysis
COMPSs
YEASTRACT
WormBase
Reactome knowledgebase of biological pathways
PRIDE
PANTHER
AnalysisServiceService
Kyoto encyclopedia of genes and genomes KEGG
GROMACS grid-enabled WeNMR portal
ENA sequence search
SearchService
BioCyc collection of Pathway Genome Databases
ProCARs
Genevestigator
International protein index IPI
PICR
Pfam
HOGENOM
EMBOSS backtranseq
EMBOSS backtranambig
MOLGENIS
EMBOSS sixpack
Whatizit
EMBOSS backtranseq
SPIN
SPIn
SWISS-MODEL Workspace
MINT
Molecular interaction Database MINT
SWISS-MODEL Repository
Gromacs
Atlas of Genetics of Cancer
ExpaRNA web server
MAFFT
ExpaRNA
Proteome-pI
IPC
HADDOCK grid-enabled
CS-ROSETTA3
SeaBed
MDWeb
GOdMD
MDMoby
MDdMD
DNAlive
FlexServ
MICCA
MICCA
eDGAR
EDGAR
The Human Protein Atlas
MinePath
seqr
PhenomeCentral
RD-Connect ID-Cards
RSAT
show_emfit
show_simul
bactgeneSHOW
show_viterbi
phmmer
jackhmmer
hmmstat
hmmsim
hmmsearch
hmmscan
hmmfetch
hmmemit
hmmconvert
hmmbuild
hmmalign
Blast
PDB-BLAST
WU-BLAST
R3D-BLAST
Cascade PSI-Blast
biojs-io-blast
BLAST-Filter-Tool
BLAST
PSI-BLAST
ClustalOWS
ClustalWS
ProbconsWS
JpredWS
IUPredWS
GlobPlotWS
DisemblWS
JronnWS
GLprobsWS
MuscleWS
CLARK
RiboGalaxy
GEOsearch
FGAP
EGSEA
UniProt ID Mapping
UniProt Archive
UniProtKB
UniProt BLAST
UniProt Align
JASPAR
Jaspar_service
protk
miRMaid
OSSE (An Online Sample Size Estimator)
seqr
Genomatix GeneGrid
Peregrine literature indexing service
Alamut
Variant Analysis and Filtration Tool (VarAFT)
Dutch diagnostic Variant Database (DVD)
DELLY2
Exome aggregation consortium (ExAC)
Mutalyzer
Phenotips
UMD predictor variant predictor system
bicycle: bisulfite-based methylcytosine caller
International Classification of Diseases (ICD-10)
Semantic web application network (COEUS)
RD-connect platform
Human Gene Mutation Database (HGMD)
Human Phenotype Ontology (HPO)
Database of Genotypes and Phenotypes (dbGAP)
Rare disease Registry Framework (RDRF)
Diseasecard: Rare disease research portal
Yabi analysis workflow environment
Exomiser
Phenome central
dbNSFP
ExomeDepth
Human Splicing Finder
ClinVar
SChloro
ISPRED
METAREP
READemption
WS-SNPs and GO
TreeDyn
Blast2GO
PAA - Protein Array Analyzer
Meta-SNP
DrCancer
Kraken
StemChecker
StemCellNet
IgDiscover
psichomics
psichomics
CORNET
CCHMMPROF
BaCelLo
Ensembl OpenAPl2Biotools
acdc
acdc
Proteios Software Environment
LipidCreator
LUX Score
PMut
PMut
CoPub
MIRU-VNTRplus
inGAP-sv
PAComplex
RJPrimers
PINTA
BIOSMILE
SAM-T08
ProfCom
GoGene
GeSBAP
Dali server
PredUs
eProbalign
R.E.D.
ChemMine Tools
Semantic-JSON
SROOGLE
PRUNE and PROBE
MetalDetector
PHUSER
RegPredict
MobilomeFINDER
ClanTox
PharmMapper
RNAmute
Rosetta FlexPepDock
ISPIDER Central
CCRXP
RosettaAntibody
PEP-FOLD
RNAmutants
Predikin
SNPinfo
MetaboAnalyst 2.0
Superimpose
Frog2
YLoc
mirAct
PILGRM
CPHmodels-3.0
MirZ
WebFR3D
CPC
ALADYN
PicXAA-Web
RuleGO
OrthoSelect
RegPrecise
MinActionPath
MetaMHC
deconSTRUCT
RAPIDO
DHcL
ParticleStats
Gene3D
UM-PPS
DiRE
PROTEUS2
WhichGenes
BeeSpace Navigator
waviCGH
DBCP
Phyloscan
RF_DYMHC
3D-Fun
MODPROPEP
SLiMDisc
SLiMSearch
Asterias
iPath
IEDB-AR
MaXIC-Q
SLiMFinder
ENDEAVOUR
HexServer
soaPDB
RegAnalyst
mGenomeSubtractor
KFC Server
PhyloPars
ALTER
RNAbor
FFPred
SITEHOUND-web
PLAST-ncRNA
AquaSAXS
NAPS
SALAMI
SEPPA
FGF
GCView
BLASTO
iPDA
SFmap
NetMHC-3.0
SDM
wwLigCSRre
EMBRACE Web Service
RNABindR
ANNIE
3D-partner
IntFOLD
ProteinCCD
SNOW
PLecDom
IDT SciTools
GeConT 2
EMBL-EBI Framework
Struct2Net
MassTRIX
OligoHeatMap
corRna
NQ-Flipper
NeAT
psRNATarget
FALC-Loop
mirConnX
fastSCOP
Freiburg RNA Tools
GLAMM
CENTDIST
MSEA
i-GSEA4GWAS
BioProfiling.de
MPlot
CGView Server
Sequence Harmony
VisHiC
GIS
pssRNAMiner
TFAM
SplitPocket
miRvestigator
E3Miner
RHYTHM
DrugScorePPI
BioCatalogue
MarkUs
QuickSNP
CentroidHomfold-LAST
PREP Suite
QUMA
FluGenome
CLICK
BSQA
SH3-Hunter
ProteDNA
QSCOP - BLAST
OREST
RNA Movies
OligoWalk
TFM-Explorer
NetCSSP
SLITHER
Multifit
AsiDesigner
SEQATOMS
Virus Genotyping Tools
VarioWatch
PiRaNhA
FoXS
ICSNPathway
TranslatorX
FMM
ARISTO
Gendoo
SA-Mot
RNApredator
R-Coffee
NMR Constraints Analyser
GPU.proton.DOCK
MedlineRanker
MADNet
BioMet Toolbox
e-LEA3D
PAP
PHOG
SARA
xREI
KINARI-Web
MADAP
BioLit
PVS
WDAC
mGene.web
PRI-CAT
PepServe
SCANPS
PubChem BioAssay Service
3dLOGO
SNPsyn
ICM Web
PHAST
HotPoint
WebGMAP
INTREPID
WIWS
GeNMR
Signature
BAR-PLUS
PIE
MolAxis
Protein Dipole Server
OpenHUSAR
MMIA
DIALIGN-TX
OmicBrowse
SMAP-WS
COPS
iSARST
IC50-to-Ki
HMMER Web Server
Genome Surveyor
PHEMTO
ChIP-Array
webPIPSA
RCI
ADGO
iTOL
SEA
Selecton
iPBA
GeneCAT
GUIDANCE
MassNet
d-Omix
SplicePort
Multi-Harmony
BLAST Viewer
matrix-clustering
Protemot
GEMS
Zinc Finger Tools
PROMALS and PROMALS3D
NTMG
MEME Suite
BROP
RACE
ESTExplorer
TMB-Hunt
ZiFiT
MINER
CodonO
SCMD
GRIFFIN
PISCES
CARMAweb
PBE
CorGen
AlgPred
NXSensor
CUPSAT
NAST
ProMateus
MPI Toolkit
oGNM
BioBayesNet
PDB_Hydro
POWER
GPCRsclass
MEDock
BiologicalNetworks
MaM
WebTraceMiner
siVirus
MicroFootPrinter
ReadOut
POCO
TreeDet
AntiHunter 2.0
Localizome
MAGIIC-PRO
MODi
G2D
VIRGO
PEPVAC
ITS2
FoldX
INDELSCAN
MoD Tools
TACT
MutScreener
JProGO
ArchPred
Pcons.net
KOBAS
PlotRep
BindN
CRSD
DISULFIND
MeMo
RPBS
OPAAS
POXO
Projector 2
MIDAW
ModelTest Sever
MovieMaker
DINAMelt
MAPPER2 Database
LTR_Finder
RosettaDesign
PREDITOR
PHEPS
GoPubMed
TSEMA
RegRNA
MIGenAS Toolkit
GeneHub-GEPIS
BASys
GlyNest and CASPER
SEPACS
OPTIMIZER
EGassembler
FeatureExtract
Pcleavage
metaSHARK
T-profiler
CBS DAS protein viewer
TarFisDock
GC-Profile
FatiGOplus
M4T
WikiGene
GeMprospector
TFBScluster
NOMAD-Ref
Scooby-domain
Neuropred
PAL2NAL
DCODE.ORG
CCT
ASIAN
FeatureMap3D
ACT
OligoCalc
SPACE
Spritz
WebMAM
DOMAC
FF - Fragment Finder
oPOSSUM
FOLD-RATE
Footer
LitMiner
GenePath2
pTARGET
PCE
CEAS
ASePCR
CARGO
MAGMA
sgTarget
dsCheck
ReMus
iCR
FFAS
PreBI
enoLOGOS
Pathway Explorer
BTW
PONGO
eF-seek
PI2PE
SUMOsp
MultiPhyl
pknotsRG
QuadFinder
VOMBAT
RibEx
dnaMATE
MutDB
SCANMOT
DyNAVacS
KAAS
DeNovoID
WEGO
PRODOC
miPred
MelinaII
ProTeus
PIC
PAST
APID
ScanProsite
FastSNP
SynoR
GenDecoder
ProSAT2
KinDOCK
WoLF PSORT
DSHIFT
CanPredict
MICheck
transFold
WhETS
SEARCHGTr
QGRS Mapper
3DSS
E-RNAi
MRS
TargetIdentifier
BhairPred
Virtual Ribosome
DOUTfinder
MetaPath Online
POPSCOMP
botXminer
pKD Server
ARGO
SCRATCH
OrfPredictor
Protein Peeling 3 D
SEM
Consensus Server
SiteSeer
Proteome Analyst
TRACTS
SuperPose
IBM Bioinformatics and Pattern Discovery Group
BioProspector
RevTrans
DePIE
ESEfinder
AGenDA
PlasMapper
EVAcon
PRED-TMBB
SSEP
Assembly PCR Oligo Maker
Meta-BASIC
NDB Tools
GFINDer
CONREAL
POBO
SledgeHMMER
ICGEBnet Protein Tools
MicroInspector
ProbeLynx
GeneSilico
ERPIN
siDirect
Kinefold
FATCAT
PatMatch
CompareProspector
PROSPECT-PSPP
FrameD
MolProbity
FoldMiner and LOCK 2
ECR Browser
SVM-PROT
REPPER
TMBETA-NET
SCit
PredictRegulon
ISTECH SNPAnalyzer
nsSNPAnalyzer
E2G
GeneSeeker
iMOT
BOMP
SDPpred
RNA Analyzer
ESLpred
NORSp
SITECON
CRP
RbDe
TROD
DNannotator
NEWT
PPG
VAMPIRE
MyHits
rVISTA
3Motif
siRNA Selection Server
NRPS-PKS
DEQOR
BSDD
JCat
REDUCE
AUGUSTUS
pevoSOAR
SNP Cutter
PBIL
MAVID
GlycoSearchMS
ExpressYourself
ProteinDBS
CHOP
PriFi
DIALIGN
ClusPro
PathBLAST
CE-MC
tRNAscan-SE
Wurst
Qgrid
PromoterPlot
PDB2PQR Server
ArrayProspector
Expression Profiler
ElNemo
Consite
NRSAS
SDPMOD
RNA Studio
POPS
ISOTOPICA
PipeAlign
WEB-THERMODYN
PDBSiteScan
TRAMPLE
miRU
GPCRpred
TOUCAN 2
UniqueProt
I-Mutant2.0
Electronic PCR
LowComplexity
PRALINE
ArrayXPath
rMotif
ChipInfo
SBT Interface - dbMHC
MotifViz
SNPbox
GeneFizz
TMH Benchmark
GDAP
SEARCHPKS
Rescue-ESE
Sfold
PrediSi
Web Weeder
RECON
PatSearch
CSTminer
NLProt
MONSTER
INCLUSive
MDscan
MITOPRED
HHpred
Glyprot
Riboswitch finder
ARTS
iSPOT
AS2TS
WAViS
AMIGene
Swiss EMBnet
WebInterViewer
QuasiMotiFinder
Andrej Sali Lab
CASTp
GraBCas
ASmodeler
ALGGEN
MoViES
BioInfo3D
PDA
EnteriX
Match
Loc3D
PepBuild
Pathway extraction
P-Match
3Matrix
LOCtarget
JVirGel
LNAtools
The Mendel Site
CARRIE
PSEUDOVIEWER
Protinfo
VADAR
YMF 3.0
DSSPcont
3D-Jury
Motif3D
Bioverse
WebFEATURE
GEPAS
STING Millenium
RNAsoft
ELM
Cluster Buster
Vienna RNA Package
PSORT.org
GOblet
BPROMPT
PromoSer
EVA
SDA (Statistical DIGE Analyzer)
Genonets
Arion 4 Omics
PIA - Protein Inference Algorithms
BIP
Lucy
TriplexRNA
TRAPLINE
Pergola
gsrc
WhatsHap
COPASI
BWA - SamTools - Picard
transPLANT-INB Cloud
EBI Tools Portfolio
biojs-model
MoDEL
PCASuite
Maker
Open PHACTS
openphacts-vis-compoundinfo
DISCRETE (DMD)
GenomeCRISPR
cERMIT
SynTView
CellNetAnalyzer
microMUMMIE
NASTIseq
PIPmiR
miReduce
circBase
PicTar
RiboTaper
SABIORK: reactions and their kinetics
Decryptor
Peakzilla
HANA
WebLogo
Trim Galore
WGCNA
RStudio
RSeQC
SortMeRna
GSEA
Picard tools
IGB
Glimmer
FGENESH
GeneMark
GREAT
DISCOVAR
DISCOVAR de novo
FASTX-Toolkit
Ontologizer
GOrilla
Artemis
g:Profiler
BiNGO
Bioconductor
Generic GO Term Finder
InterProScan
Generic GO Term Mapper
Ontology Lookup Service
QuickGO
AmiGO 2
GONUTS
GO Consortium Enrichment Tool
XTandem
Tracer
SnpEff
STITCH
Smoldyn
Segway
rRNASelector
Segtools
rNMR
PSICQUIC view
RAxML
ProteoWizard
ProbCons
ProteomeXchange
PeakSeq
PRANK
PAML
MetFusion
MetFrag
Open Babel
MaxQuant
MetExplore
Limix
SBML
ISA tools
iPython Notebook
GINsim
IMEx
GOLD
GAT
ggplot2
GERP
FigTree
FastTree
Ensembl REST API
Dendrix
FaST-LMM
Cyrface
Cytoscape
Bio-Cigar
BPP
BEAST
bedGraphToBigWig
Auto-Rickshaw
BAli-Phy
trackViewer
SwimR
HilbertVisGUI
idiogram
geneplotter
HilbertVis
EBImage
Director
ChromHeatMap
biosvd
GENE.E
BrowserVizDemo
MEIGOR
BrowserViz
ASGSCA
simulatorZ
Rtreemix
randPack
MeasurementError.cor
lol
INPower
SNPediaR
seqbias
savR
sangerseqR
RSVSim
girafe
CorMut
clonotypeR
seqPattern
seqLogo
dagLogo
sagenhaft
roar
sSeq
ArrayExpressHTS
RNASeqPower
RIPSeeker
tracktables
pmm
plrs
seqTools
GMRP
htSeqTools
rnaseqcomp
Basic4Cseq
dupRadar
fCI
IPPD
ASEB
cisPath
cleaver
scsR
ReQON
REDseq
r3Cseq
NTW
hiReadsProcessor
DupChecker
BUS
DNABarcodes
RUVnormalize
lpNet
STRINGdb
vtpnet
Path2PPI
pathifier
NetSAM
DriverNet
caOmicsV
CNORfuzzy
parody
BiRewire
LBE
MineICA
GeneOverlap
IHW
cnvGSA
dks
TargetScore
MotifDb
motifRG
miRNAmeConverter
Roleswitch
splots
SLqPCR
mmnet
yaqcaffy
vsn
tspair
topGO
tilingArray
stepNorm
TDARACNE
spikeLI
spotSegmentation
sizepower
SNAGEE
SIM
RTopper
ROntoTools
rMAT
rama
RefPlus
rbsurv
Pviz
quantro
PGSEA
pvac
pepStat
PADOG
OLIN
OutlierD
OLINgui
nnNorm
nem
multiscan
NanoStringQCPro
mdqc
MiChip
MBCB
maskBAD
maSigPro
maCorrPlot
marray
LVSmiRNA
LPEadj
inveRsion
iterativeBMAsurv
impute
IdeoViz
Harshlight
Heatplus
Gviz
GSEAlm
genefilter
GEOsubmission
GenomeGraphs
gcrma
genArise
focalCall
dyebias
CGHnormaliter
cycle
CGHcall
CALIB
BeadDataPackR
blima
arrayQualityMetrics
BAC
beadarray
affyQCReport
arrayQuality
affypdnn
affyPLM
affyILM
affyPara
affy
affycomp
ACME
ADaCGH2
a4Reporting
ABarray
a4Preproc
a4Core
a4Classif
a4Base
exomePeak
a4
xcms
TPP
shinyTANDEM
specL
rTANDEM
sapFinder
Rdisop
proteoQC
PROcess
pepXMLTab
MSnID
PAPi
MetCirc
MSGFplus
metabomxtr
metaMS
Metab
isobar
MassSpecWavelet
IPO
iontree
cosmiq
CAMERA
proFIA
BRAIN
zlibbioc
KEGGprofile
widgetTools
weaver
splicegear
TypeInfo
tkWidgets
RpsiXML
ProtGenerics
RGalaxy
panp
preprocessCore
oligoClasses
lpsymphony
GEOmetadb
Icens
ggbio
Genominator
epivizrServer
DynDoc
epivizrData
convert
chimera
BufferedMatrix
BufferedMatrixMethods
biovizBase
biocViews
BiocInstaller
BiocParallel
BiocCaseStudies
BiocGenerics
BiocCheck
arrayMvout
Biobase
affyContam
aroma.light
HiTC
AffyCompatible
statTarget
synapter
pRolocGUI
Prostar
epivizrStandalone
explorase
MSGFgui
SQUADD
epivizr
SBMLR
SPIA
Rgraphviz
rsbml
RefNet
RCytoscape
RGraph2js
RBGL
RCyjs
predictionet
ppiStats
PCpheno
pkgDepTools
paircompviz
pathRender
MVCClass
NCIgraph
minet
mirIntegrator
KEGGgraph
keggorthology
hypergraph
joda
GraphAT
hyperdraw
GraphAlignment
graph
ddgraph
GeneNetworkBuilder
CausalR
CHRONOS
BioMVCClass
biocGraph
apComplex
BiGGR
signeR
goTools
RareVariantVis
Rariant
microRNA
snpStats
GWASTools
RLMM
CNVtools
chopsticks
TSSi
VariantTools
trio
TEQC
ssviz
SNPRelate
SLGI
SeqVarTools
RRHO
riboSeqR
rain
MutationalPatterns
HIBAG
MLP
gwascat
GGBase
genoCN
GEWIST
GeneticsDesign
GeneticsPed
FamAgg
GeneGeneInteR
CexoR
DOQTL
AllelicImbalance
CAnD
SISPA
pwOmics
pathVar
npGSEA
mgsa
GSVA
GOFunction
gCMAPWeb
CompGO
cpvSNP
triplex
StarBioTrek
SpidermiR
rTRMui
pqsfinder
rTRM
INSPEcT
MatrixRider
cleanUpdTSeq
geneplast
geneAttribution
BCRANK
TSCAN
trigger
sscu
SSPA
SEPA
RUVcorr
RTN
RPA
PROMISE
qpcrNorm
QuaternaryProd
pcaGoPromoter
prebs
pandaR
Oscope
netbenchmark
NormqPCR
MiRaGE
miRLAB
MGFM
MGFR
kimod
MBASED
HybridMTest
iBMQ
GSReg
GSEABase
goseq
GSCA
GeneMeta
GGtools
GeneExpressionSignature
GeneGA
ExiMiR
farms
ffpe
EmpiricalBrownsMethod
easyRNASeq
doppelgangR
EasyqpcR
dcGSA
DeMAND
CoRegNet
covRNA
CAFE
CCPROMISE
BioQC
birta
AGDEX
attract
affycoretools
AffyRNADegradation
ABAEnrichment
viper
RchyOptimyx
diggit
flowType
ncdfFlow
flowTrans
FlowRepositoryR
flowPloidy
flowQB
flowClean
flowMap
flowCL
COMPASS
GOTHiC
wateRmelon
ISoLDE
shinyMethyl
skewr
normalize450K
Repitools
MethylSeekR
MPFE
methylKit
MBAmethyl
methyAnalysis
GEM
lumi
charm
ChAMP
bsseq
bumphunter
BiSeq
ARRmNormalization
pcaExplorer
lfa
gcatest
GENESIS
COHCAP
missMethyl
webbioc
XDE
waveTiling
twilight
tweeDEseq
timecourse
TCC
TCGAbiolinks
survcomp
subSeq
sscore
ssize
sRAP
splineTimeR
spliceSites
snm
siggenes
sigPathway
SeqGSEA
RTCGAToolbox
Rnits
ROC
RDAVIDWebService
RnaSeqSampleSize
RBM
prot2D
Polyfit
polyester
PROPER
PLPE
plw
plgem
pickgene
piano
pcot2
PathNet
pathview
OrderedList
OCplus
NOISeq
nudge
NanoStringDiff
mvGST
multtest
Mulcom
MODA
MoonlightR
metahdep
metaSeq
MethylMix
metaArray
MergeMaid
MAST
LPE
macat
mAPKL
LMGene
logitT
lapmix
lmdme
IsoGeneGUI
JunctionSeq
HTSFilter
iCheck
GSRI
HEM
globaltest
gprege
globalSeq
GlobalAncova
GeneSelector
Glimma
GeneSelectMMD
gage
flagme
fgsea
fdrame
FEM
eegc
factDesign
EnrichmentBrowser
EDASeq
EBSeq
DTA
diffGeneAnalysis
DMRcate
DFP
DEsubs
DEGreport
DEGseq
DEFormats
DEDS
DeconRNASeq
ddCt
daMA
DART
cqn
Cormotif
compcodeR
copa
clippda
coGPS
ccmap
bridge
casper
bgx
BGmix
ballgown
baySeq
ampliQueso
anota
AMOUNTAIN
AgiMicroRna
ABSSeq
TargetSearch
acde
DEGraph
ScISI
XVector
Sushi
S4Vectors
SeqArray
OSAT
rBiopaxParser
MultiAssayExperiment
oposSOM
GenomicTuples
IRanges
GeneAnswers
esetVis
bigmemoryExtras
bioCancer
xps
tximport
AnalysisPageServer
Streamer
tofsims
SRAdb
ShortRead
Rqc
rSFFreader
rpx
Ringo
ReadqPCR
Rhtslib
rhdf5
R453Plus1Toolbox
readat
PSICQUIC
qrqc
plethy
ProteomicsAnnotationHubData
OTUbase
Pbase
openCyto
oneChannelGUI
oligo
mzR
mzID
minfi
MSnbase
MassArray
manta
IONiseR
LOBSTAHS
makecdfenv
ImmuneSpaceR
illuminaio
ibh
HTqPCR
GoogleGenomics
genomeIntervals
GEOquery
genbankr
GeneRegionScan
ExperimentHubData
ExperimentHub
flowWorkspace
edge
ENCODExplorer
deepSNV
diffloop
CytoML
DAPAR
CNEr
codelink
BrainStars
BioNet
biomformat
AtlasRDF
biobroom
AnnotationHubData
ArrayExpress
affyio
AnnotationHub
affxparser
CrispRVariants
GUIDEseq
TurboNorm
CRISPRseek
MEDME
methylumi
bigmelon
HELP
RNAprobR
methylPipe
SMITE
GenomicFiles
M3D
ensembldb
fCCAC
BasicSTARRseq
compEpiTools
VanillaICE
SNPchip
TitanCNA
SMAP
snapCGH
seqCNA
reb
quantsmooth
QDNAseq
NGScopy
MinimumDistance
OGSA
ITALICS
MANOR
GLAD
HMMcopy
genoset
exomeCopy
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CopywriteR
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isomiRs
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GOsummaries
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fabia
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cummeRbund
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methVisual
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maftools
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GenVisR
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ExpressionView
eisa
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DirichletMultinomial
ctc
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clstutils
ClusterSignificance
ClassifyR
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TransView
PICS
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immunoClust
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simpleaffy
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GOstats
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genomes
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ArrayTools
annotationTools
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SPLINTER
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spliceR
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puma
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limma
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edgeR
erccdashboard
DEXSeq
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BitSeq
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traseR
TFBSTools
systemPipeR
segmentSeq
Rsamtools
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odseq
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TVTB
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ToPASeq
ternarynet
TarSeqQC
switchde
synergyfinder
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supraHex
SVM2CRM
STATegRa
SRGnet
SPEM
spkTools
SNPhood
SimBindProfiles
SIMAT
SICtools
sevenbridges
seqplots
SemDist
seq2pathway
SELEX
scran
scater
scde
SC3
SCAN.UPC
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safe
RTCGA
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rols
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rgsepd
rfPred
rGREAT
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ReportingTools
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RedeR
recoup
rDGIdb
Rcpi
Rchemcpp
RCAS
rcellminer
RankProd
RbcBook1
qusage
qpgraph
qcmetrics
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psygenet2r
PureCN
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profileScoreDist
ProCoNA
proBAMr
Prize
PREDA
plier
philr
Pi
PGA
PharmacoGx
PECA
paxtoolsr
PathoStat
oppar
omicade4
nondetects
nucleoSim
netbiov
MultiDataSet
MultiMed
msPurity
msmsTests
msmsEDA
mogsa
miRNAtap
MMDiff2
miRcomp
methylMnM
metaseqR
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metaCCA
MeSHSim
MetaboSignal
meshes
Mergeomics
MEAL
matter
matchBox
massiR
MAIT
M3Drop
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LEA
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intansv
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imageHTS
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GenRank
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gCrisprTools
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frmaTools
frma
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FlowSOM
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flowCHIC
flowcatchR
fastLiquidAssociation
FitHiC
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DiffLogo
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destiny
derfinder
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crisprseekplus
CoverageView
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covEB
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conumee
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chromstaR
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cellity
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canceR
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BiocWorkflowTools
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BaalChIP
annotatr
ASSET
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anamiR
ALDEx2
AIMS
Prot pi
mspire-simulator
compareMS2
Graph Extract
decoy.pl
make_random
MS-Isotope
Database Manager
Molecular Weight Calculator
libipaca
isotope.py
isotop_fs
Isotope calculator
isotop
IDCalc
iso2l
BRAIN
enviPat
MSiReader
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MSImageView
ProteomeDigestSim
Axima2Analyze
PeptideCutter
Protein Digestion Simulator Basic
PChopper
MS-Digest
dig2
InDigestion
HX-Express
dig
hydrogen_bondifier
ExMS
HDX WorkBench
AUTOHD
Deuterator
XLink
xComb
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CCdigest
XPRESS
RelEx
Quant
RAAMS
PVIEW
ProRata
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muxQuant
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MSstats
MSQuant
MFPaQ
Libra
MassChroQ
ICPL_ESIQuant
isobar
ICPLQuant
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XTandemPipeline
ASAPRatio
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ProteinProphet
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PeptideProphet
ms2preproc
Mayu
mres2x
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goa_gubbar
XTandem
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TopPIC
VEMS
PepSplice
SearchGUI
Percolator
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MassWiz
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MassMatrix
MASCOT
greylag
ProteinProspector
EasyProt
ProFound
ProteinGuru
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MS-Fit
theospec
UniMod
ProSight PTM
ProSight PTM Ion Predictor
Popitam
PepNovo
POSTMan
PEAKS De Novo
Novor
lutefisk
InSpecT
DeNovoGUI
GlycoMod
CrossTalkDB
Delta Mass
rt
SSRCalc
hplcsimulator
retentionprediction
BioLCCC
SpecArray
recal2
OBI-Warp
msalign
msalign2
ID-Align
CPM
Y.A.D.A.
adjustPKL
nontarget
Xtractor
massifquant
libmprc
ESIprot
esimsa2D
DeconTools
esimsa
SpiderMass
DeconMSn
LipidXplorer
wiff2dta
T2D converter
unfinnigan
ReAdW
PyMS
Out2Summary
PklFileMerger
mzStar
msgfdb2pepxml
mz2mgf
msconvert
multiplierz
MSD File Reader
.dta to MGF File Converter
MassHunter File Reader
MassWolf
DataAnalysis2TPP
idconvert
dat2mgf
CompassXport
collect_mgf
APLToMGFConverter
Taverna4Proteomics
VIPER
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Scaffold Viewer
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Protter
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MapQuant
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imDEV
cdfread
XCMS
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TPP
QuPE
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Proteomatic
pymzML
PRIDE Toolsuite
Proteios
PeptideShaker
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Mass-up
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ZORRO
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WebPrInSeS
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Variation toolkit
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USeq
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Tripal
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Syapse
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Swift
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Standardized Velvet Assembly Report
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Post Assembly Genome Improvement Toolkit
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PASS
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Partek Genomics Suite
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Omixon Variant Toolkit
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OLego
ODIN
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NextGen Utility Scripts
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NCBI Genome Workbench
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Myrna
NarrowPeaks
MuTect
MuSICA 2
Mutascope
MUMmerGPU
MuMRescueLite
MultiQC
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MU2A
MultiPSQ
MrFAST
MTR
MrsFAST
MrBayes
MrCaNaVaR
MotifLab
MPscan
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MOM
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MMSEQ
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MISO
MirTools
MiRspring
MirTrios
MiRNAkey
MiRProf
MiRDeep
MIRA
MiRanalyzer
MiRCat
MIP Scaffolder
MICSA
Minia
Microsoft Biology Foundation
MeV
MG-RAST
MicroRazerS
Methpipe
MethylCoder
Metaxa
MetaSim
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METAGENassist
Metagenome-Kin
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Meraculous
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MAXIMUS
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Mapsembler
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MagicViewer
LookSeq
LSKB, Life Science Knowledge Bank
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LAST
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Kismeth
KBASE
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ISSAKE
Isas
ISAAC
IQSeq
IOmics
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Ingenuity Variant Analysis
Illuminator
IMAGE
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ICORN
IDBA
IGV
HPeak
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HTSeq
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Goby framework
GlobalSeq
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GenoREAD
GenomicTools
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GenomeJack
GenomeMapper
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Genomatix Mining Station (GMS)
Genome Trax
GeneTalk
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GENALICE MAP
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GEM library
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GATK
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FreClu
FREEC
FrameDP
Freebayes
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Flux
FragGeneScan
Flower
Flexbar
FLASH
Filter
FindPeaks 3.1
FindPeaks 4.0 (Vancouver Short Read Package)
FeatureCounts
Figaro
FHiTINGS
FAST: Fast Analysis of Sequences Toolbox
FastQC
FastQ Screen
FastQValidator
FaBox
FACS
Falcon
ExomeCNV
ExomeCopy
ExomePicks
Exonerate
Error Correction Evaluation Toolkit
Est2assembly
ERNE
ERGO Genome Analysis and Discovery System
ERANGE
ERDS
EpiGRAPH
ELAND
EMBF
EdgeR
EBCall
EDENA
ECHO
Easyfig
EaSeq
EagleView genome viewer
EagleView
DSRC
DSGseq
Ea-utils
DSAP
DNAzip
DrFAST
DNaseR
DNAA
DNA Chromatogram Explorer
DiscoSnp
DNA Baser
Diffreps
Dindel
DESeq
DIAL
DiffBind
DeepTools
DeFuse
DEGseq
DecGPU
DeconSeq
Cutadapt
Curtain
DCLIP
CummeRbund
Cufflinks
CUDA-EC
CRAVAT
CRISP
Crossbow
Cortex
CPTRA
CRAC
CopySeq
Coral
CORAL (Contig Ordering Algorithm)
Contra
Contrail
ContEst
CoNAn-SNV
ConDeTri
CompreheNGSive
CNV-seq
CNVkit
Colib read
CNVnator
CNB MetaGenomics tools
CnD
CNANorm
CloudBurst
ClipCrop
CloudAligner
Cluster Flow
Clean reads
CLCbio Genomics Workbench
CleaveLand4
Cistrome
CisGenome
ChromHMM
Circos
ChromaSig
ChIPseqR
Chipster
ChIPmeta
ChIPMunk
CHiPSeq
ChimeraScan
CGA Tools
CHiCAGO
ChIP-Seq (application)
CEQer
CexoR
CatchAll
CANGS
CATCH
BWA
CABOG
BWA-SW
BSMAP
BS Seeker
Btrim
BreakSeq
Breakway
BreakTrans
BreakDancer
Breakpointer
BRCA-diagnostic
BRAT
BOW
Bowtie
BLAST Ring Image Generator
BLAT
Blixem
Bismark
Bison
Bis-SNP
BiQ Analyzer HT
BioRuby
BiQ Analyzer
BioSmalltalk
Biopython
Biopieces
BioPerl
BioPHP
Bionimbus
BioNumerics
BigBWA
BioJava
BFCounter
Belvu
BFAST
Bedutils
BEADS
BEDTools
BEAP
BBSeq
Bcbio-nextgen
BBMap
BaySeq
Batman
BayesCall
BayesPeak
BarraCUDA
Barcrawl Bartab
Barcode generator
BAMseek
Bambus
BamTools
BamView
Atlas-SNP2
Atlas Suite
Bambino
ArrayStar
ATAC
ASC
Arf
AREM
Array Suite
ANNOVAR
Arachne
AMOS
Anno-J
ANCHOR
AnCorr
ALLPATHS
Alta-Cyclic
ALEXA-Seq
Agp2amos
AGE
AGILE
ADTEx
Adapter Removal (software)
ABySS
4peaks
.NET BIO
A5
ABBA
RECOUNT
TASE
Integron Finder
MacSyFinder
BMGE
alienTrimmer-IP
AlienTrimmer
MEMHDX
sequana_coverage
SHAMAN
SARTools
SEEK for Science
BLAST DataBase Manager
MLibrary
S2P
LA-iMageS
MSqRob
Proline
Mass-Up
MetFrag
pileup_to_vcf-IP
ssaha_pileup-IP
PicardInsertSize-IP
FROGS_biom_to_stdBiom-IP
ngs_simulation-IP
hgv_ldtools-IP
hgv_lps-IP
coordinatesToSequence-IP
meme_fimo-IP
PicardGCBiasMetrics-IP
presartools-IP
cshl_fastx_quality_statistics-IP
roi_feature_projection-IP
picard_ARRG-IP
fastqc-IP
Sabund-IP
solid2fastq-IP
fastme-IP
rankoptimizer-IP
bedtools_coveragebed_counts-IP
bedtools_bamtobed-IP
annotatePeaks-IP
export_sbw-IP
fastqc_toolshed-IP
getLetterDistribution1-IP
bedtools_multiintersectbed-IP
gdtools_annotate-IP
gdtools_mask-IP
FROGS_remove_chimera-IP
fqquality-IP
mbwa_wrapper-IP
restrictSequenceList-IP
hgv_david-IP
samtools_slice_bam-IP
cuffcompare-IP
FROGS_filters-IP
GemReads-IP
restrictFromSize-IP
gatk2_validate_variants-IP
gatk2_variant_filtration-IP
mpileup-IP
fqseqname-IP
pindel-IP
circos-IP
seqtypedetect-IP
SelectByTag-IP
cshl_fastx_nucleotides_distribution-IP
chipmunk_chiphorde-IP
tophat-IP
gatk2_variant_apply_recalibration-IP
countNumber-IP
CompareOverlappingSmallRef-IP
bedtools_intersectbed_bam-IP
kronaExtract-IP
restrictTranscriptList-IP
fqseqpair-IP
mapperAnalyzer-IP
clustalo-IP
convert2annovar-IP
sartools_deseq2-IP
BCF-Tools-Index-IP
FROGS_affiliations_stat-IP
cshl_fastx_collapser-IP
roi_sort-IP
vcf_consensus-IP
ConvertTranscriptFile-IP
phyml-IP
getExons-IP
bam2roi-IP
noisy_oneclick-IP
CD-HIT-IP
roi_filter-IP
seedGff-IP
vcfQfilter-IP
FragGeneScan-IP
annovar_summarize-IP
export-IP
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bowtie_wrapper-IP
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plot-IP
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meme_meme-IP
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taxoptimizer-IP
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gdtools_apply-IP
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listInputs-IP
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vcf_remove_filtered-IP
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genbank_to_gene-IP
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countNumber_parallel-IP
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interElementGff-IP
annotateGenes-IP
findpromoter-IP
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vcfFormatAndMerge-IP
getWigDistance-IP
reformat_fastq-IP
sam_to_bam-IP
gatk2_realigner_target_creator-IP
gatk2_depth_of_coverage-IP
noisy-IP
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clc_cas_to_sam-IP
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gdtools_intersect-IP
getNumber-IP
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AntaRNA web server
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XPlatCom (Cross PLATform COMmander)
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DeepBlue Epigenomic Data Server
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blast2genoclass
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rankoptimizer
Proteinspector
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Protein Crystallisation Construct Designer
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Recombinant Virus Database (RVD)
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SRD: a Staphylococcus regulatory RNA database
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HeteroMirPred
SEAR: Search Engine for Antimicrobial Resistance
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Open PHACTS Explorer
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Chlamydia trachomatis MLST
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Livermore Metagenomics Analysis Toolkit
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phyml
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Virtual Folder for Structural Biology Projects
PDB_REDO databank
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Ontology Lookup Service
Virus Database VIDA
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ReMoDiscovery
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cell-motility
Thermo MSF Parser
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Arabidopsis growth regulators network
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CRISPRmap web server
Konstanz Information Miner (KNIME)
ProCon (Proteomics Conversion Tool)
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iRefR (iRefIndex Manager)
The Genomic HyperBrowser
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Open PHACTS API
MicroScopeMaGe
Genome Wide Association Study pipeline (GWASpi)
The Chickpea Portal
IPK BLAST Server
European Variation Archive
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clustalO-multialign
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PeptideShaker
SNPitty
Medline Ranker
PowerFit web portal
SABIO-RK: webservices
The Flux Simulator
European Virus Archive
ViPR: Virus Pathogen Resource
Compomics-sigpep
Network Motif Clustering Toolbox
PlantGenIE.org
The Leucobacter sp. AEAR genome resource
convert-matrix
GREAT:SCAN:multipatterns
Orange Bioinformatics
firestar WebServices
Peptide evidences CNIO
System Biology Platform
Rscripts for data analysis
Coremine Medical
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Taxonomic profiling using mOTUs
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clustalw-sequence
Digenic Diseases Database
Physiolibrary
SILVA rRNA database project
HomoloSampler
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Ensembl query-based biclustering
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matcherService
prettyplotService
GenesilicoMetaRNASOAPService
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EhabitatPywpsServer
PredictProtein Open
EffectiveCCBD
CAVER PyMOL plugin
ComplexHeatmap
GeneDB_Spombe
GeneID database of genes from NCBI RefSeq genomes
GenoList comparative analysis of microbial genomes
Homologous vertebrate genes database HOVERGEN
IMGT database of human MHC
Kinetoplastid genome resources TritryPDB
biojs-meta-vis
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biojs-io-newick
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bionode-fasta
ProteinCutter
MOLE PyMOL plugin
eXpress - cloud IFB
Saqqaq Genome Project
Gene ontology
European genome-phenome Archive EGA
BioModels database of annotated published models
Ensembl Genomes
ICLC Interlab Cell Line Collection Catalogue
ChEMBL RESTful Web Service
Legionella pneumophila genome database
Ligand-gated ion channel database LGICdb
Microbial advanced database organisation Micado
MIPS mouse functional genome database MfunGD
Mouse Genome Informatics
Mycobacterium leprae genome database
NCBI database of sequence tagged sites
PMAP-CutDB proteolytic event database
ProMEX protein mass spectral library
SISYPHUS database of protein structure alignments
The Arabidopsis information resource TAIR
The EMBL Nucleotide Sequence Database EMBL
The RCSB Protein Data Bank
The SEED genome comparison environment
Trichomonas genome resources TrichDB
UCSC genome browser
biojs-io-matrix
biojs-vis-wigexplorer
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PLAZA monocots
Orphanet Rare Disease Ontology
BBMRI-NL catalog
UnderlyingApproach
UnderlyingFilter
BACH Bayesian Analysis Conformation Hunt
GPCR SARfari Small Molecule Search
Malaria Data Small Molecule Search
Kinase SARfari BLAST Search
IntAct Editor
Identifiers.org resolver
1000Genomes ID history converter
BioModels Database Converters
SurvCurve - Analyse data
Variant Effect Predictor
1000Genomes VCF2PED
Assembly converter
PomBase assembly converter
EMBOSS pepstats
EMBOSS newcpgreport
Ensembl Genomes Protists sequence search
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PomBase Blast
Ensembl Genomes Bacteria Blast
Ensembl Genomes Bacteria sequence search
What peptidase can cleave this bond
Ensembl Genomes Protists VEP
Template searching
Ensembl Genomes Plants ID history converter
DbClustal (REST)
WU-BLAST (REST)
EMBOSS water (REST)
EMBOSS needle (REST)
EBISearchService
PESINameService
PSICQUIC (SPIKE)
Pathway Commons
List Ontologies
Download an ontology file
eFetchSequenceService
GLANGSoapService
dottupService
GenomicAlignments
annotationTools
GenomicRanges
IdMappingAnalysis
The Chemistry Development Kit
backtranambig
cacheebeyesearch
EnrichedHeatmap
GenomicInteractions
aaindexextract
biojs-io-snipspector
muts-needle-plot
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biojs-vis-gprofiler
biojs-vis-keggviewer
PatternExplorer
oases - cloud IFB
cutadapt - cloud IFB
BWA cloud IFB
hmmer - cloud IFB
MEME suite - cloud IFB
R - cloud IFB
seqmatchallService
showalignService
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abiviewService
TogowsDdbjGetentryService
GBIF occurrence web service
Hierarchy Web services
gmap_iit_store
EffectiveS346
CAVER Analyst
HotSpot Wizard
CancerMutationAnalysis
ChEMBL compound
MOLGENIS compute
RNAeditingAtlas
CcpNmr Analysis
GeneDB database
Allergome a platform for allergen knowledge
Gramene database for comparative grass genomics
IDbases immunodeficiency mutation databases
Monosaccharide database
NCBI reference sequences
NCBI taxonomic identifier
NextBio gene-centric data
Non-redundant reference UniRef databases
PhosphoELM database
PIRSF whole-protein classification database
Protein Model Portal
REBASE restriction enzymes and methylases database
RNA editing database REDIdb
Saccharomyces genome database SGD
Tandem splice site database
The C.elegans ORFeome cloning project
The international immunogenetics database IMGT
The world-2DPAGE database
Yeast gene order browser
Multi Experiment Matrix
biojs-vis-pmccitation
SimExpr2SampleData
Ensembl Genomes Protists data slicer
Ensembl Genomes Fungi data slicer
PomBase data slicer
Ensembl Genomes Plants data slicer
EMBOSS seqret
EnzymePortal - Protein sequence search
Europe PMC ORCID Tool
Europe PMC plus Grant Linking
Mocapy plus plus
LightStringGraph
InterProScan 5
ChebiWebServiceService
FUNCRESAnnotationService
Ensembl Genomes Protists assembly converter
PDBsum Generate
EMBOSS stretcher
InterProScan 4
Ensembl Genomes Plants VEP
Transcription-Factor DNA motif prediction
Ensembl Genomes Fungi ID history converter
ID History converter
ClustalW2 (REST)
NomenclatureService
Scooby_Domain_Prediction
DOMAINATION_Domain_Prediction
ModelProcessorService
Taxonomic Name Resolution Service
FetchProDomService
Auto-Complete Neuroscience Terms
Display information about a particular ontology
eFetchTaxonService
eUtilsService
NCI CADD Chemical Identifier Resolver
DBManagerService
Golm Metabolome Database (GMD)
Genes by Predicted Signal Peptide
Genes by Transmembrane Domain Count
Phylogenetics_AT_JST
dotpathService
derfinderHelper
ReportingTools
variancePartition
SplicingGraphs
AnnotationForge
domainsignatures
ENVISIONQuery
pdInfoBuilder
SummarizedExperiment
VariantAnnotation
wossoperation
dbxuncompress
LCMS TNO DECO
mview_alignment
backtranambig
scan_for_matches
ontogetobsolete
taxgetspecies
printsextract
biojs-vis-diseaseinfo
biojs-stat-seqs
Repeat Explorer
AtomicChargeCalculator
velvet - cloud IFB
cufflinks cloud IFB
fastqc - cloud IFB
IUPHAR BPS Guide to PHARMACOLOGY
SEQanswers Wiki
ELIXIR eLearning Portal
ConsensusClusterPlus
Key Pathway Miner
FASTA online toolbox
Taxonomic metagenome tool
Rfam database
Europe PMC RESTful Web Service for Articles
PSICQUIC (MBInfo)
European Nucleotide Archive (ENA) Browser
ClustalW2 Phylogeny (REST)
T-Coffee (REST)
CorNet Arabidopsis
Nucleotide Sequence Database
BBMRI-EU catalog
WebMicroscope
Clinical Trials Information Mediator
PDB - Protein Database
micrographite
Small Molecule Search
Kinase SARfari Small Molecule Search
ChEMBL Biologicals BLAST Search
ChEMBL BLAST Search
Ensembl Genomes Metazoa data slicer
1000Genomes Variation Pattern Finder
Europe PMC plus Manuscript Submission System MSS
1000Genomes assembly converter
National microbial pathogen
NCI-Nature pathway interaction database
Online Mendelian inheritance in Man OMIM
PDB-redo database of re-refined PDB entries
PDBFINDER reformatted PDB files
SCOP database
TCA cycle gene mutation database
Toxoplasma genome resources ToxoDB
UniTrap gene trap clones
biojs-io-fasta
biojs-vis-sam
biojs-io-clustal
Giardia genome resources GiardiaDB
Human gene nomenclature database HGNC
RNA virus genome database RNAVirusDB
MEROPS peptidase database
Ensembl Genomes Metazoa assembly converter
Ensembl Genomes Plants assembly converter
EMBOSS matcher
EMBOSS needle
TreeFam search
HMMER hmmscan
Ensembl Genomes Plants sequence search
R Cloud Workbench
Ensembl Genomes Protists ID history converter
MiriamProviderService
SBOProviderService
AphiaNameService
TFmodellerServiceService
MutalyzerService
Genes by Isoelectric Point
variantAnnotationService
DataQueryService
GPMDB REST API
TaxonNameService
megamergerService
diffseqService
dotmatcherService
est2genomeService
needleService
skipredundant
metagenomeSeq
categoryCompare
clusterProfiler
IdMappingRetrieval
fetchSequences
blast2taxoclass
blast2taxonomy
clustalO-profile
wordmatchService
infoalignService
moduleorganizer
EMMAWebService
DAVIDWebService
AlkemioSOAPbeta1HandlerService
ELMInstanceMapper
Allen Brain Atlas Browse
Conditional quantile normalization
HotSpot Wizard
biojs-vis-easy_features
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biojs-vis-inchlib
biojs-vis-hgv
biojs-io-graduates
IoM - Interpreter of Mass
ImageJ - cloud IFB
MMsSimilarity
germ-line V genes
Glycosciences
Maize genetics and genomics database MaizeGDB
Sequence Alignments
Clustal Omega
EMBOSS isochore
Ensembl Genomes Metazoa Blast
PDBeXplore: sequence similarity search
PomBase Motif search
Ensembl Genomes Bacteria VEP
Ensembl Genomes Fungi VEP
Ensembl Genomes Metazoa ID history converter
CorNet Arabidopsis
Histone Coder
PumpClassifier
Prokaryote RNA sequence analysis workflow
EBI Metagenomics
Infernal cmscan
PSI-Search (REST)
NCBI BLAST (REST)
Grape Database
Nannocholopsis gaditana Database
GPCR SARfari BLAST Search
DrugEBIlity BLAST Search
ChEMBL Small Molecule Search
Malaria Data BLAST Search
1000Genomes data slicer
PSI-MI Validator
Osteogenesis imperfecta collagen mutation
PDBsum overview of macromolecular structures
PeptideAtlas peptide database
PeroxiBase peroxidase family database
PRINTS protein motif fingerprint database
ProDom protein domain database
PseudoCAP pseudomonas genome database
Topology of transmembrane proteins
Transport classification database
UniGene gene-oriented nucleotide sequence clusters
Yeast GFP fusion localization database
Zebrafish information network genome database
biojs-rest-ensembl
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EMBOSS stretcher (REST)
EMBOSS matcher (REST)
MIRIAM Resources
JDispatcherService
iHOP_SOAP-document-literal
RegionServiceService
Peptide Match
PDB_describePDB
ProTagService
Hogenom_evoscen
eFetchPmcService
eFetchSnpService
wsLibrarySearch
Genes by Organism
Lynx Multi-Gene Annotations
stretcherService
supermatcherService
BMS standards registry
Legal and ethical assessment tool
erccdashboard
GenomicFeatures
VariantFiltering
metagenomeFeatures
SimBindProfiles
maskambigprot
drfindresource
ontoisobsolete
ontogetcommon
helixturnhelix
biojs-vis-circularnet
bionode-template
MotiveValidator
TopHat - cloud IFB
I-MUTANT Suite
FlyBase Chado XML Web Service
TogowsDdbjGibvService
GBIF taxon web service
SynsetServerService
BioMartSoapService
PRECISService
PsicquicService
AnnotationFuncs
derfinderPlot
Expression Atlas
Enzyme Portal
WSCitationImplService
The BioCatalogue REST API
PSI-BLAST (REST)
Venn Diagrams
Protein Data Bank
Orphanet portal for rare diseases and orphan drugs
PLATO Plugin for Autocomplete on Ontologies
MRC Image Processing Package
ClustalW2 Phylogeny
EMBOSS pepinfo
EMBOSS pepwindow
FingerPRINTScan
EMBOSS cpgplot
Ensembl Genomes Metazoa sequence search
Ensembl Genomes Protists Blast
Ensembl Sequence Search BLAST
Ensembl Genomes Fungi Blast
Ensembl Genomes Plants Blast
FASTA protein sequence search against the PDB
Probe and Primer Search
1000Genomes VEP
Ensembl Genomes Metazoa VEP
Ensembl Genomes Bacteria ID history converter
BEAR Brand nEw Alphabet for RNA
ChEMBL NTD Small Molecule Search
Advanced PDB search
Ensembl Genomes Fungi assembly converter
Plasmodium genome resources PlasmoDB
Rat genome database
RESID database of protein modifications
RNA families database of alignments and CMs
SeattleSNPs variation discovery resource
Simple modular architecture research tool SMART
Transcription factor prediction database DBD
Xenopus laevis and tropicalis
RobustRankAggregation
biojs-vis-sequence
biojs-io-annots
FunctionalServiceService
TCGA DCC Web Service
Online SBML Validator
RSATWebServices
PSICQUIC (InnateDB Curated)
ProdomCG_tree
ProdomCG_evoscen
Pathbase2_SOAPService
The Ontological Discovery Environment
NIF Registry search
Pairwise Alignment of PDB Structures
eFetchGeneService
GeneByLocusTag
Genes by Epitopes Presence
Genes by Molecular Weight
G-language REST service
IceLogoService
polydotService
aligncopypair
MethTargetedNGS
AnnotationDbi
fastLiquidAssociation
RiboProfiling
unifiedWMWqPCR
embossversion
rebaseextract
MetabolomeXchange
Nutritional Phenotype Database
edamhasoutput
SwissSimilarity
ASTD database
Phosphorylation site database
2D-PAGE database
ArachnoServer
ArchDB database of loop structures
Blackfan Anemia mutation database Diamond
CiteXplore literature database
Cryptosporidium genome resources CryptoDB
Culture collection of algae and protozoa CCAP
Database of protein disorder DisProt
Database of single nucleotide polymorphism dbSNP
dbEST database of EST sequences
Dinucleotide property database DiProDB
DNA Data Bank of Japan DDBJ
Electron density server at Uppsala university EDS
Gametogenesis and reproductive tissue expression
NetDiseaseSNP
PathogenFinder
3DID database of 3D interacting domains
Apicomplexan database resources ApiDB
Assembling the Fungal Tree of Life AFTOL
Candida genome database CGD
Cell cycle database CellCycleDB
CleanEx database of gene expression profiles
Cone snail toxin database ConoServer
Conserved domain database CDD
DPVweb database of plant viruses
Eukaryotic linear motif resource ELM
FlyBase database of Drosophila
GenBank nucleotide sequence database
GenomeReviews
Prokaryotic protein phosphatase database PptaseDB
AceView genes database
Alternative splicing prediction database ASPICdb
Comparative genometrics CG database
COMPLUYEAST-2DPAGE database
ConsensusPathDB
Database of interacting proteins DIP
DIMA domain interaction map
DrugBank drug and drug target database
GenAtlas human gene database
PubMeth reviewed methylation database in cancer
A protein family database
ARAMEMNON database of plant membrane proteins
Collagen Mutation Database CMD
Comparative Toxicogenomics Database CTD
Comprehensive yeast genome database CYGD
DIMA domain interaction map
Edinburgh Mouse Atlas EMAP
Entrez Protein Clusters
European Hepatitis C virus database euHCVdb
GenePublisher
HLArestrictor
American type culture collection database ATCC
BindingDB database of measured binding affinities
BRENDA comprehensive enzyme information system
Carbohydrate-active enzymes database CAZy
CATH protein structure classification database
Complete Arabidopsis transcriptome database CATdb
DSSP secondary structure database
Gene3D structural
GeneCards database
StartScan
TREECON
Gene Stacker
Explora
OntoBrowser
META-GECKO
Magallanes
Flipper
Genome Maps
tagtog
HiC-Pro
MGX
PACMAN
SLiMSuite
KB-Rank
SNPs and GO
Holovir
Human Gene Correlation Analysis
Excemplify
MrBayes
Mendelian
FLAD
Halvade
LNCipedia
DISTILLER
ModuleDigger
ViTraM
SPPG
dbtoolkit
OMSSA Parser
Scop3d
TOPPR
Cellmissy
MoFF
PhysBinder
PlantCARE
FloReMi
Needles
DynaMine
bowtie
PRECOG
GECKO-CSB
jORCA
AlloPred
CAMEO
Precrec
SciTrack
CPMD
Kaiju
BRENDA
PlantsDB
PPI
EDIA
SIENA
BLSSPELLER
PheNetic
Reporter
Pepshell
Ols-dialog
Ms-lims
Jtraml
Mesalina
StrainInfo
AFLPinSilico
ASaturA
FunSiP
HyperGeny
MotifSuite
ZT
mORCA
PsychoProt
NGL VIewer
GECKO
VARIANT
EURISCO
BUSCO
CEGA
miRmap
CCharPPI
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BIPA
EcID
ESTs SOURCE
GeneSNPs
TubercuList
HSSP
MisMax
CSpritz
ESpritz
HOMER-M
NCBI dbProbe
PharmGKB
SpliceAid
DSK
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AphidBase
Commet
gCocoa
seqlm
KEGGanim
bionode-sam
NetAcet
pHSol
Promoter
RNAmmer
Tapir
NetPicoRNA
CPHmodels
DictyOGlyc
EasyGene
ENZYME
Cytoscape.js
DNAS
MOLEonline
PatternQuery
EEM Solver
BEGDB
SeaView
I-MUTANT
MemLoci
TPpred
NET-GE
INPS
Cscan
Victor
BOOGIE
ABACUS
QueryOr
FastEP
QCluster
KeeSeeK
MPA
RepeatsDB
PASTA
MobiDB
InterMap3D
MLST
NetTurnP
NetUTR
TatP
VarDom
NetMHC
NetMHCcons
NetMHCpan
FeatureP
NutriChem
SpindleP
ResFinder
NetNES
NetCTLpan
NetPhosBac
NNAlign
DiscoTope
UniCarbKB
SugarBind
smirnaDB
arrayMap
HAMAP
Selectome
EchoBASE
ProtoNet
GASSST
MindTheGap
Primer3
pheatmap
slush-biojs
BepiPred
DistanceP
HMMgene
scipy
transaction
cubes
mdp
setuptools
botocore
pyzmq
ipywidgets
partd
scikit-learn
astropy
nbformat
grin
pip
statsmodels
boto
dnspython
s3fs
cryptography
pytz
scipy
translationstring
xlsxwriter
basemap
sqlparse
cryptography
pyasn1
cymem
ipython-notebook
fontconfig
pivottablejs
statsmodels
jedi
conda-env
sockjs-tornado
gitdb2
freetype
qtpy
conda
enum34
nltk
cvxopt
gdal
future
enable
h5py
nbformat
sphinx
sip
gevent
lxml
sympy
scikit-image
biopython
pylint
python
spacy
s3transfer
matplotlib
conda-build
gevent
s3transfer
gunicorn
pyyaml
numba
cmake
nltk
numexpr
setuptools
zeromq
scikit-bio
boto
pytables
virtualenv
reportlab
multipledispatch
werkzeug
jupyter_client
cryptography
qtpy
cloudpickle
pep8
future
datashape
werkzeug
jinja2
pyyaml
twisted
unicodecsv
thrift
toolz
pytest
pycosat
numba
scipy
python
scipy
flask
ipyparallel
spyder
gevent_zeromq
numpy
pytest
astropy
lockfile
clyent
grin
mccabe
astropy
gevent-websocket
numba
scikit-bio
xray
mistune
pytest
scikit-learn
chalmers
xlsxwriter
blaze
pytables
pytest
nose
psutil
pytest
datashader
conda-build-all
reportlab
conda-build
requests
holoviews
yt
snowballstemmer
babel
qtconsole
py
sympy
spyder-app
python
fontconfig
scikit-image
numexpr
setuptools
dask
multipledispatch
line_profiler
wtforms
psutil
lxml
unicodecsv
chalmers
scipy
scikit-image
conda
anaconda-build
scipy
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markupsafe
setuptools
cvxopt
numexpr
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setuptools
bz2file
biopython
execnet
libpng
parsel
cubes
astropy
patsy
scikit-image
conda
traitlets
xlrd
shapely
paramiko
yt
pillow
django
setuptools
statsmodels
pexpect
bz2file
boto
dbf
bsddb
patsy
pandas
matplotlib
python-daemon
astropy
gdal
scikit-image
colorcet
nose
llvmpy
boto3
conda
distributed
patsy
blz
tornado
blaze
nb_anacondacloud
numba
conda
ruamel_yaml
pyzmq
boto
numba
conda
numba
blaze
toolz
pytables
multipledispatch
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enaml
spacy
pyflakes
werkzeug
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mpi4py
s3fs
cffi
w3lib
pandas
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cdecimal
headers_workaround
widgetsnbextension
anaconda
pandasql
gdal
spyder-app
markupsafe
matplotlib
cryptography
datashape
toolz
anaconda-verify
semver
boto
argcomplete
unicodecsv
dynd-python
python-dateutil
pyzmq
hyde
feedparser
pysam
pyopengl
mpi4py
_license
jupyter_console
requests
simplegeneric
botocore
numpydoc
ipykernel
jmespath
runipy
flask
xlsxwriter
werkzeug
wcwidth
libxslt
astropy
requests
gevent
conda-build
ipykernel
cryptography
pip
clyent
conda-build
sympy
pymysql
django
scikit-image
sqlalchemy
psutil
binstar
scikit-image
ipython-qtconsole
pandas
gitpython
simplejson
stripe
notebook
anaconda
vcversioner
conda-build
anaconda-verify
gdata
cycler
anaconda-client
requests
quandl
conda
conda
matplotlib
biopython
pytest
boto
conda-build
scipy
glueviz
docopt
scipy
reportlab
pyparsing
conda
sqlalchemy
azure
pillow
markdown2
statsmodels
h5py
nbconvert
enable
traitlets
boto
anaconda-client
shapely
feedparser
pyzmq
werkzeug
numexpr
bcolz
scikit-image
m4
bokeh
pyflakes
astropy
pyface
s3fs
datashape
psycopg2
constructor
pysal
scipy
coverage
flask-cors
pyflakes
matplotlib
get_terminal_size
numpy
s3fs
pyramid_debugtoolbar
traitlets
pystan
bcolz
requests
numba
pyopengl-accelerate
idna
bcolz
shapely
colander
qtconsole
singledispatch
pyzmq
twisted
numexpr
pysal
pytables
sphinx
unidecode
pygpu
babel
conda
idna
pytz
conda
gensim
more-itertools
numpy
ipython
spacy
scikit-learn
libgdal
imaging
websocket
twisted
ipyparallel
ipython-qtconsole
pytest
scikit-learn
setuptools
sphinx_rtd_theme
paramiko
conda
scikit-learn
blaze
anaconda-client
zope.deprecation
fastcache
docutils
django
pillow
numba
pycrypto
numba
cython
dynd-python
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conda
teradata
conda-build
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pandasql
xlrd
numexpr
backports_abc
pandasql
dbf
setuptools
pandas
astropy
distribute
numexpr
scipy
python-memcached
node-webkit
scipy
astropy
quandl
idna
xlwt
flex
sqlalchemy
passlib
networkx
spyder
cloudpickle
numpy
scipy
numba
ipython-notebook
flake8
blaze
conda
mayavi
anaconda-navigator
pycurl
reportlab
flask
constantly
llvmpy
path.py
future
flake8
decorator
glueviz
h5py
werkzeug
pyopengl
decorator
conda
multimethods
beautiful-soup
openpyxl
click
zope.interface
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conda-build
jupyter_client
blaze
sqlalchemy
progressbar
patsy
yt
requests
ujson
ptyprocess
python
markupsafe
binstar-build
clyent
pyqt
pytest
greenlet
nltk
constructor
datashape
numpy
pip
mock
spyder
olefile
pylint
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routes
partd
cycler
_license
boto
constructor
teradata
qtawesome
greenlet
astroid
binstar
scikit-image
scipy
matplotlib
luigi
dnspython
numpy
lxml
h5py
twisted
pandas
llvmlite
blaze
prompt_toolkit
llvmpy
bottleneck
ply
biopython
holoviews
pyqt
scikit-image
dill
disco
requests
conda
pyramid_jinja2
thinc
py
numpy
sqlalchemy
beautifulsoup4
pathlib2
llvmpy
spyder
pywget
numba
werkzeug
numba
numexpr
bcrypt
greenlet
python-gflags
semver
conda-build
qgrid
lxml
sphinx_rtd_theme
distributed
pip
lancet
sas7bdat
django
anaconda
h5py
mercurial
holoviews
pyqt
numexpr
constructor
boto
scikit-image
seaborn
decorator
numexpr
nltk
traitlets
scipy
django
pylint
kiwisolver
keyring
qtawesome
llvmlite
bcolz
sockjs-tornado
beautifulsoup4
conda
setuptools
pytest
psutil
binstar
scikit-learn
sqlalchemy
binstar
psutil
holoviews
toolz
boto
python
mako
fiona
cryptography
argcomplete
dill
conda-build
prompt_toolkit
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pymc
conda
conda
ipython-qtconsole
text-unidecode
mdp
setuptools
pymc
whoosh
sympy
anaconda-navigator
matplotlib
ipython
pandas
cython
oracle-instantclient
werkzeug
pykit
pytest
netcdf4
jinja2
lxml
flask-wtf
rasterio
s3fs
constructor
pip
mistune
blaze-core
psutil
funcsigs
pillow
jupyter_console
launcher
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xarray
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ipython
cloudpickle
boto
scikits-image
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flake8
functools32
venusian
natsort
cio-bt
llvmlite
django
zope.interface
bokeh
pymc
scikit-learn
jinja2
numba
idna
conda-build
pyopenssl
pickleshare
numpy
cubes
opencv
stripe
pyodbc
llvmpy
conda-build
flask-cors
botocore
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bokeh
nltk
requests
numba
pylearn2
ply
scipy
nb_anacondacloud
protobuf
cython
datashape
meld3
numba
datashape
py2cairo
anaconda-clean
petl
scipy
cligj
apr
ipython
pil
cython
py
pytz
neon
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toro
blaze
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yt
sqlalchemy
psutil
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traits
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pip
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lxml
python
llvmlite
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pyflakes
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param
qt
openpyxl
holoviews
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netcdf4
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odo
cligj
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wtforms
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binstar
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numpy
conda
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gdal
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pyamg
boto3
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sqlparse
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llvmlite
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netcdf4
ipywidgets
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ephem
matplotlib
llvmpy
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gsl
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isort
nb_conda
pytz
pycurl
pathlib2
cython
snappy
conda-build
scikit-image
jupyter_console
ujson
cytoolz
shapely
xray
pygments
memory_profiler
jinja2
lcms
into
workerpool
numba
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scipy
py
zeromq
glog
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freetype
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olefile
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ecdsa
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xray
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cffi
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pysal
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redis
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krb5
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webob
scipy
dask
botocore
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hyde
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bsddb
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cython
plac
param
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dill
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pip
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numba
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setuptools
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pysal
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headers_workaround
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cython
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partd
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cython
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html5lib
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_nb_ext_conf
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ipython
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r-maps
r-nlme
r-mgcv
r-mime
r-glmnet
r-lazyeval
r-plyr
r-survival
r-markdown
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r-shinybs
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r-testthat
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r-png
r-reshape2
r
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rpy2
r-devtools
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please add CGView Comparison Tool in the list (http://stothard.afns.ualberta.ca/downloads/CCT/)

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