Created
October 19, 2013 23:43
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R implementation of the Naive Bayes classifier example from [Wikipedia](http://en.wikipedia.org/wiki/Naive_Bayes_classifier#Examples).
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| # naivebayes.txt | |
| # | |
| # sex height weight footsize | |
| # male 6 180 12 | |
| # male 5.92 190 11 | |
| # male 5.58 170 12 | |
| # male 5.92 165 10 | |
| # female 5 100 6 | |
| # female 5.5 150 8 | |
| # female 5.42 130 7 | |
| # female 5.75 150 9 | |
| library("data.table") | |
| train <- function (dt) { | |
| return(dt[,list(meanHeight=mean(height), varHeight=sd(height), | |
| meanWeight=mean(weight), varWeight=sd(weight), | |
| meanFootsize=mean(footsize), varFootsize=sd(footsize)), by=sex]) | |
| } | |
| classify <- function (classifier, sample) { | |
| posterior <- function (sample, class_prior, class) { | |
| p_height <- dnorm(sample$height, class$meanHeight, class$varHeight) | |
| p_weight <- dnorm(sample$weight, class$meanWeight, class$varWeight) | |
| p_footsize <- dnorm(sample$footsize, class$meanFootsize, class$varFootsize) | |
| return(class_prior * p_height * p_weight * p_footsize) | |
| } | |
| class_male <- classifier[which(classifier$sex == 'male'),] | |
| class_female <- classifier[which(classifier$sex == 'female'),] | |
| prior_male <- 0.5 | |
| prior_female <- 0.5 | |
| return(list(male=posterior(sample, prior_male, class_male), | |
| female=posterior(sample, prior_female, class_female))) | |
| } | |
| training_set <- data.table(read.table('naivebayes.txt', header=TRUE)) | |
| sample = data.table(height=6, weight=130, footsize=8) | |
| classifier <- train(training_set) | |
| result = classify(classifier, sample) | |
| cat('posterior(male) =', result$male) | |
| cat('posterior(female) =', result$female) |
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