Created
April 18, 2017 12:48
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Sample code when genes are set to real number and the ranges are set.
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| import random | |
| import numpy | |
| from deap import algorithms | |
| from deap import base | |
| from deap import creator | |
| from deap import tools | |
| creator.create("FitnessMax", base.Fitness, weights=(1.0,)) | |
| creator.create("Individual", numpy.ndarray, fitness=creator.FitnessMax) | |
| toolbox = base.Toolbox() | |
| n_gene = 100 | |
| min_ind = numpy.ones(n_gene) * -1.0 | |
| max_ind = numpy.ones(n_gene) * 1.0 | |
| def create_ind_uniform(min_ind, max_ind): | |
| ind = [] | |
| for min, max in zip(min_ind, max_ind): | |
| ind.append(random.uniform(min, max)) | |
| return ind | |
| toolbox.register("create_ind", create_ind_uniform, min_ind, max_ind) | |
| toolbox.register("individual", tools.initIterate, creator.Individual, toolbox.create_ind) | |
| toolbox.register("population", tools.initRepeat, list, toolbox.individual) | |
| def evalOneMax(individual): | |
| return sum(individual), | |
| def cxTwoPointCopy(ind1, ind2): | |
| size = len(ind1) | |
| cxpoint1 = random.randint(1, size) | |
| cxpoint2 = random.randint(1, size - 1) | |
| if cxpoint2 >= cxpoint1: | |
| cxpoint2 += 1 | |
| else: # Swap the two cx points | |
| cxpoint1, cxpoint2 = cxpoint2, cxpoint1 | |
| ind1[cxpoint1:cxpoint2], ind2[cxpoint1:cxpoint2] = ind2[cxpoint1:cxpoint2].copy(), ind1[cxpoint1:cxpoint2].copy() | |
| return ind1, ind2 | |
| def mutUniformDbl(individual, min_ind, max_ind, indpb): | |
| size = len(individual) | |
| for i, min, max in zip(xrange(size), min_ind, max_ind): | |
| if random.random() < indpb: | |
| individual[i] = random.uniform(min, max) | |
| return individual, | |
| toolbox.register("evaluate", evalOneMax) | |
| toolbox.register("mate", cxTwoPointCopy) | |
| toolbox.register("mutate", mutUniformDbl, min_ind=min_ind, max_ind=max_ind, indpb=0.05) | |
| toolbox.register("select", tools.selTournament, tournsize=3) | |
| def main(): | |
| random.seed(64) | |
| pop = toolbox.population(n=300) | |
| hof = tools.HallOfFame(1, similar=numpy.array_equal) | |
| stats = tools.Statistics(lambda ind: ind.fitness.values) | |
| stats.register("avg", numpy.mean) | |
| stats.register("std", numpy.std) | |
| stats.register("min", numpy.min) | |
| stats.register("max", numpy.max) | |
| algorithms.eaSimple(pop, toolbox, cxpb=0.5, mutpb=0.2, ngen=1000, stats=stats,halloffame=hof) | |
| return pop, stats, hof | |
| if __name__ == "__main__": | |
| main() |
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