Brian M Hamlin darkblue-b

Search and Matching / Gene Sequences

Notes on implementation language environments, execution performance and machine considerations; based on the software technical supplement to "Uncovering disease-disease relationships through the incomplete interactome" Science Magazine Feb 2015

19Apr15 dbb _v0.2

Observations

supplied python code ran quickly on all compute environments (~2 seconds)
non-trivial transform of a python networkx interactome requires 9GB of physical RAM


	<script type="text/vnd.graphviz" id="graphviz">
	digraph G {
	"browser" ->
	"http_request" ->
	"server" ->
	"routes" ->
	"controller" ->
	"model" -> "controller"
	"controller" -> "response"

	#!/bin/sh

	CITY="HOLLYWOOD_CA"

	#34.10256/-118.36805

	## W,S,E,N ?
	## (south,west,north,east) from the Overpass wiki page

	## BONN_DE