compile delft3d on rockylinux9

delft3d

#!/bin/env bash
# shfmt -i 2 -ci -w
set -eox

wget https://registrationcenter-download.intel.com/akdlm/IRC_NAS/d461a695-6481-426f-a22f-b5644cd1fa8b/l_HPCKit_p_2024.2.1.79_offline.sh

sh ./l_HPCKit_p_2024.2.1.79_offline.sh -a --silent --cli --eula accept

# pre-requisites
apt update && apt install -y \
  bison \
  cmake \
  file \
  flex \
  g++ \
  gfortran \
  libblosc-dev \
  libcurl4-openssl-dev \
  libhdf5-serial-dev
  m4 \
  make \
  patch \
  patchelf \
  pkg-config \
  python3 \
  python3-pip \
  ruby \
  sqlite \
  subversion \
  unzip \
  util-linux \
  uuid-dev

#########################
# Set environment variables for compilers
export LD_LIBRARY_PATH=/opt/intel/oneapi/2024.2/lib:/opt/intel/oneapi/compiler/2024.2/lib:/home/delft3d/lib:$LD_LIBRARY_PATH
export PATH="/home/delft3d/bin:$PATH"
export MAKEFLAGS="-j $(nproc)"

##############################
# Create necessary directories
mkdir -p /home/delft3d/src &&
  mkdir -p /home/delft3d/
cd /home/delft3d/src
export SRCDIR=/home/delft3d/src

##################
# Download sources

[ ! -f "zlib-1.3.1.tar.gz" ] && wget https://github.com/madler/zlib/releases/download/v1.3.1/zlib-1.3.1.tar.gz -O zlib-1.3.1.tar.gz
[ ! -f "hdf5-1_10_5.tar.gz" ] && wget https://github.com/HDFGroup/hdf5/archive/refs/tags/hdf5-1_10_5.tar.gz -O hdf5-1_10_5.tar.gz
[ ! -f "v4.9.2.tar.gz" ] && wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.9.2.tar.gz -O netcdf-c-4.9.2.tar.gz
[ ! -f "netcdf-fortran-4.6.1.tar.gz" ] && wget https://downloads.unidata.ucar.edu/netcdf-fortran/4.6.1/netcdf-fortran-4.6.1.tar.gz -O netcdf-fortran-4.6.1.tar.gz
[ ! -f "petsc-with-docs-3.21.1.tar.gz" ] && wget https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-with-docs-3.21.1.tar.gz -O petsc-with-docs-3.21.1.tar.gz
[ ! -f "v1.14.0.tar.gz" ] && wget https://github.com/google/googletest/archive/refs/tags/v1.14.0.tar.gz -O googletest-1.14.0.tar.gz
[ ! -f "v2.0.0.tar.gz" ] && wget https://github.com/OSGeo/gdal/archive/refs/tags/v2.0.0.tar.gz -O gdal-2.0.0.tar.gz
[ ! -f "proj-4.9.3.tar.gz" ] && wget https://download.osgeo.org/proj/proj-4.9.3.tar.gz -O proj-4.9.3.tar.gz

#########################
# Install zlib
tar -xzvf zlib-1.3.1.tar.gz &&
  cd zlib-1.3.1 &&
  ./configure --prefix=/home/delft3d &&
  make &&
  make check &&
  make install &&
  cd $SRCDIR

######
# hdf5
tar -xzvf hdf5-1_10_5.tar.gz &&
  cd hdf5-hdf5-1_10_5 &&
  ./configure --with-zlib=/home/delft3d --enable-parallel --enable-fortran --prefix=/home/delft3d
make &&
  make install &&
  cd $SRCDIR

export FC=mpiifx
export CXX=mpiicpx
export CC=mpiicx
source /opt/intel/oneapi/setvars.sh

##################
# netcdf-c library
tar -xzvf netcdf-c-4.9.2.tar.gz &&
  cd netcdf-c-4.9.2 &&
  export CPPFLAGS='-I/home/delft3d/include' &&
  export LDFLAGS='-L/home/delft3d/lib' &&
  ./configure --prefix=/home/delft3d/ --disable-libxml2 &&
  make &&
  make check &&
  make install &&
  cd $SRCDIR

########################
# netcdf fortran library
tar -xzvf netcdf-fortran-4.6.1.tar.gz &&
  cd netcdf-fortran-4.6.1 &&
  export CPPFLAGS='-I/home/delft3d/include' &&
  export LDFLAGS='-L/home/delft3d/lib' &&
  ./configure --prefix=/home/delft3d/ &&
  make &&
  make check &&
  make install &&
  cd $SRCDIR

########
# petsc
tar xvzf petsc-with-docs-3.21.1.tar.gz &&
  cd petsc-3.21.1 &&
  ./configure --prefix=/home/delft3d --download-fblaslapack=1 &&
  make PETSC_DIR=/home/delft3d/src/petsc-3.21.1 PETSC_ARCH=arch-linux-c-debug all &&
  make PETSC_DIR=/home/delft3d/src/petsc-3.21.1 PETSC_ARCH=arch-linux-c-debug install &&
  cd $SRCDIR

############
# googletest
tar -xvzf googletest-1.14.0.tar.gz &&
  cd googletest-1.14.0/ && mkdir build &&
  cd build/ && cmake -DCMAKE_PREFIX_PATH=/home/delft3d -DCMAKE_INSTALL_PREFIX=/home/delft3d .. && cmake --build . && cmake --build . --target install &&
  cd $SRCDIR

##################
# pro legacy 4.9.3
tar -xvzf proj-4.9.3.tar.gz &&
  cd proj-4.9.3 &&
  CFLAGS=-O0 ./configure --prefix=/home/delft3d &&
  make &&
  make check &&
  make install &&
  cd $SRCDIR

###################
# gdal legacy 2.0.0
tar -xvzf gdal-2.0.0.tar.gz &&
  cp patches/gdal/* gdal-2.0.0/gdal/ &&
  cd gdal-2.0.0/gdal

# convert from CRLF to LF
sed -i 's/\r$//' frmts/jpeg2000/jpeg2000_vsil_io.cpp

# Apply the patches
for patch in patch-*.cpp; do
  echo "Applying $patch..."
  patch -p0 <"$patch" | tee patch_log.txt 2>&1
done

./configure --prefix=/home/delft3d --without-jasper CFLAGS='-std=gnu89' &&
  make &&
  make install &&
  cd $SRCDIR

#################
# Delft3D
export CC=mpiicx
export CXX=mpiicpx
export FC=mpiifx
export LD_LIBRARY_PATH="/home/delft3d/lib:$LD_LIBRARY_PATH"
export LD_LIBRARY_PATH="/home/delft3d/lib64:$LD_LIBRARY_PATH"
export PKG_CONFIG_PATH="/home/delft3d/lib/pkgconfig:$PKG_CONFIG_PATH"
export PKG_CONFIG_PATH="/home/delft3d/lib64/pkgconfig:$PKG_CONFIG_PATH"
export C_INCLUDE_PATH="/home/delft3d/include"
export CPLUS_INCLUDE_PATH="/home/delft3d/include"
export PATH=/home/delft3d/bin:$PATH

svn checkout -r 142633 https://svn.oss.deltares.nl/repos/delft3d/trunk /home/delft3d/src/delft3d_142633
cp patches/delft3d delft3d_142633
cd delft3D_142633

# dos2unix
sed -i 's/\r$//g' src/utils_lgpl/deltares_common/packages/deltares_common_c/src/meminfo.cpp

# apply the patches
patch -p0 <patch-src-setenv.sh
patch -p0 <patch-src-cmake-CMakeLists.txt
patch -p0 <patch-src-utils_lgpl-deltares_common-packages-deltares_common_c-src-meminfo.cpp

./build.sh delft3d4 --compiler intel21