dcdanko · May 16, 2017 14:27
diff --git a/metaspades_batch.sh b/metaspades_batch.sh
 #!/bin/bash                                                                                                                                                                                                        
 #SBATCH -N 1                                                                                                                                                                                                       
 #SBATCH -p RM        
 #SBATCH --ntasks-per-node 28            

 EXC=/path/to/metaspades.py                         
 R1=$1                                 
 R2=$2                                
 O=$3                      

 $EXC -1 $R1 -2 $R2 -t 28 -m 128 -o $3
	#!/bin/bash
	#SBATCH -N 1
	#SBATCH -p RM
	#SBATCH --ntasks-per-node 28

	EXC=/path/to/metaspades.py
	R1=$1
	R2=$2
	O=$3

	$EXC -1 $R1 -2 $R2 -t 28 -m 128 -o $3