athena-error

2017-06-14 09:44:45 -   - 400 downsampled barcodes
2017-06-14 09:44:45 -   - 5.475x estimated local coverage
2017-06-14 09:44:45 -   - 2 min_support required
2017-06-14 09:44:46 - root-ctg:NODE_40_length_125948_cov_163.495;numreads:239831;checks:10;trunc-checks:False;asms:5;trunc-asms:False
2017-06-14 09:44:46 -   - found 7 candidates
2017-06-14 09:44:46 - performing local assemblies
2017-06-14 09:44:46 - assembling with neighbor NODE_114_length_56824_cov_153.263
2017-06-14 09:44:46 -   - 7551 orig barcodes
2017-06-14 09:44:46 -   - 400 downsampled barcodes
2017-06-14 09:44:46 -   - 14.6305232749x estimated local coverage
2017-06-14 09:44:46 -   - 4 min_support required
2017-06-14 09:44:48 - 7 initial link candidates to check
2017-06-14 09:44:49 - ========== Exception ==========
2017-06-14 09:44:49 - Traceback (most recent call last):
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/pipeline.py", line 50, in _run_chunk
2017-06-14 09:44:49 -     chunk.run()
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/stages/assemble_meta_bins.py", line 72, in run
2017-06-14 09:44:49 -     self.do_local_assembly(ctg, asmdir)
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/stages/assemble_meta_bins.py", line 137, in do_local_assembly
2017-06-14 09:44:49 -     local_asm_results = asm.assemble(local_asms, filt_ctgs=seed_ctgs)
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/assembler_tools/barcode_assembler/local.py", line 79, in assemble
2017-06-14 09:44:49 -     contig_path = self._do_idba_assembly(local_asm)
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/assembler_tools/barcode_assembler/local.py", line 106, in _do_idba_assembly
2017-06-14 09:44:49 -     local_asm.ds_bcode_set,
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/assembler_tools/barcode_assembler/local.py", line 536, in get_bcode_reads
2017-06-14 09:44:49 -     for _, qname, lines in idx.get_reads(bcode):
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/mlib/fq_idx.py", line 113, in get_reads
2017-06-14 09:44:49 -     for e in util.fastq_iter(f):
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/mlib/util.py", line 127, in fastq_iter
2017-06-14 09:44:49 -     qname, info_map = _get_qname_info(lines[0])
2017-06-14 09:44:49 -   File "build/bdist.linux-x86_64/egg/athena/mlib/util.py", line 118, in _get_qname_info
2017-06-14 09:44:49 -     qname = elms[0]
2017-06-14 09:44:49 - IndexError: list index out of range
2017-06-14 09:44:49 -
2017-06-14 09:44:49 - list index out of range
2017-06-14 09:44:49 - --starting logging AssembleMetaBinnedStep.bin.120 --
2017-06-14 09:44:49 - performing local assembly for 1 seeds
2017-06-14 09:44:49 - assembling barcoded reads for seed NODE_18_length_209539_cov_340.989