dceoy’s gists

dceoy / pypi_upload.sh

Created May 15, 2017 15:55

[Linux] Upload a Python package to PyPI

	python setup.py bdist_wheel
	twine upload dist/*.whl

dceoy / install_vbox_guest_additions.sh

Last active June 3, 2018 17:48

[Linux] Install the latest version of VirtualBox Guest Additions

	#!/usr/bin/env bash
	#
	# # Mount vboxsf
	# $ sudo mount -t vboxsf vbox ~/synced

	set -uex

	v=$(curl http://download.virtualbox.org/virtualbox/LATEST.TXT)
	curl http://download.virtualbox.org/virtualbox/${v}/VBoxGuestAdditions_${v}.iso -o /tmp/vbga.iso
	sudo mount -t iso9660 /tmp/vbga.iso /mnt/

dceoy / install_rundeck.sh

Last active February 3, 2017 06:11

[Ubuntu] Install Rundeck

	#!/usr/bin/env bash

	wget -q -O - https://bintray.com/user/downloadSubjectPublicKey?username=bintray \| sudo apt-key add -
	echo 'deb http://dl.bintray.com/rundeck/rundeck-deb /' \| sudo tee -a /etc/apt/sources.list.d/rundeck.list
	echo 'deb-src http://dl.bintray.com/rundeck/rundeck-deb /' \| sudo tee -a /etc/apt/sources.list.d/rundeck.list
	sudo apt-get -y update
	sudo apt-get -y install rundeck

dceoy / bayes_factor.cpp

Created December 28, 2015 16:44

[R] Bayes Factor from 2 x 2 contingency table

	// [[Rcpp::plugins("cpp11")]]
	#include <Rcpp.h>
	using namespace Rcpp;

	double bf(NumericVector v, int n) {
	int h = sum(rbeta(n, 1 + v[0], 1 + v[1]) > rbeta(n, 1 + v[2], 1 + v[3]));

	if (h == n) {
	return R_PosInf;
	} else {

dceoy / mcmc_logit.R

Created June 4, 2015 00:28

[R] Logistic Regression using MCMCpack

	#!/usr/bin/env Rscript

	sapply(c('dplyr', 'data.table', 'MASS', 'MCMCpack'), function(p) require(p, character.only = TRUE))

	# Biopsy Data on Breast Cancer Patients
	#
	# variables:
	# 'V1' clump thickness.
	# 'V4' marginal adhesion.
	# 'class' "benign" or "malignant".

dceoy / glm_confint.R

Last active August 29, 2015 14:21

[R] Logistic Regression using glm https://rawgit.com/dceoy/b33beb466680808f3d6e/raw/plot.svg

	#!/usr/bin/env Rscript

	# Diabetes survey on Pima Indians
	#
	# variables:
	# 'glucose' Plasma glucose concentration at 2 hours in an oral glucose tolerance test
	# 'diabetes' Diabetes pedigree function
	# 'test' test whether the patient shows signs of diabetes (coded 0 if negative, 1 if positive)
	data(pima, package = 'faraway')

dceoy / heatmap.R

Last active August 29, 2015 14:21

[R] Heatmap using ggplot2 https://rawgit.com/dceoy/5f3d99084d604b847447/raw/plot.svg

	#!/usr/bin/env Rscript

	sapply(c('data.table', 'ggplot2'), function(p) require(p, character.only = TRUE))

	mtx <- fread('matrix.csv')

	heatmap <- ggplot(mtx, aes(x = col, y = row, fill = val)) +
	geom_tile() +
	scale_fill_gradient(trans = 'log', breaks = c(10, 100, 1000), low = 'grey', high = 'blue') +
	labs(x = 'col', y = 'row')

dceoy / forest_plot.R

Last active September 13, 2019 15:11

[R] Forest Plot using ggplot2 https://rawgit.com/dceoy/a3c63540a8722afbc4dd/raw/plot.svg

	#!/usr/bin/env Rscript

	sapply(c('data.table', 'ggplot2'), function(p) require(p, character.only = TRUE))

	or_ci <- fread('odds_ratio.csv')

	forest <- ggplot(or_ci, aes(x = group, y = odds_ratio, ymin = ci_lower, ymax = ci_upper, colour = class)) +
	geom_hline(aes(yintercept = 1), colour = '#4400FF', linetype = 2) +
	geom_pointrange(size = 0.7, shape = 15) +
	scale_y_log10(limits = c(0.01, 100), breaks = c(0.1, 1, 10)) +

dceoy / d3_word_clouds.html

Last active August 29, 2015 14:20

[JavaScript] Word Clouds based on d3.js https://rawgit.com/dceoy/71b175c0b0f612927995/raw/d3_word_clouds.html

	<!DOCTYPE HTML>
	<html lang="en">
	<head>
	<meta charset="UTF-8">
	<title>D3 Word Clouds</title>
	<meta name="author" content="d4i"/>
	</head>
	<body>
	<script src="https://rawgit.com/mbostock/d3/master/d3.min.js"></script>
	<script src="https://rawgit.com/jasondavies/d3-cloud/master/d3.layout.cloud.js"></script>

dceoy / accordion.html

Last active August 29, 2015 14:20

[CSS / JavaScript] Accordion Menu https://rawgit.com/dceoy/bec35d51cffe05929a39/raw/accordion.html

Daichi Narushima dceoy