problems with mate-tools

eng.out

1	My	my	my	PRP$	PRP$	_	_	0	0	NMOD	NMOD	_	_

1	brother	brother	brother	NN	NN	_	_	0	0	ROOT	ROOT	_	_

1	has	have	have	VBZ	VBZ	_	_	0	0	ROOT	ROOT	_	_

1	a	a	a	DT	DT	_	_	0	0	ROOT	ROOT	_	_

1	dog	dog	dog	NN	NN	_	_	0	0	ROOT	ROOT	_	_

one-word-per-line.txt

1	My	_	_	_	_	_	_	_	_	_	_	_	_	_

1	brother	_	_	_	_	_	_	_	_	_	_	_	_	_

1	has	_	_	_	_	_	_	_	_	_	_	_	_	_

1	a	_	_	_	_	_	_	_	_	_	_	_	_	_

1	dog	_	_	_	_	_	_	_	_	_	_	_	_	_

parse_full.sh

#!/bin/sh


##################################################
## (1) The following needs to be set appropriately
##################################################
##TOKENIZER_MODEL="models/eng/EnglishTok.bin.gz" #This is not used here anyway. The input is assumed to be segmented/tokenized already. 
#MORPH_MODEL="models/ger/morph-ger.model" #Morphological tagger is not applicable to English. Fix the path and uncomment if you are running german.

INPUT="one-word-per-line.txt"
LANG="eng"
LEMMATIZER_MODEL="models/eng/lemma-eng.model"
POS_MODEL="models/eng/tag-eng.model"
PARSER_MODEL="models/eng/prs-eng.model"
SRL_MODEL="models/eng/srl-eng.model"
OUTPUT="$LANG.out"

##################################################
## (2) These ones may need to be changed
##################################################
JAVA="java" #Edit this i you want to use a specific JRE.
MEM="4g" #Memory for the JVM, might need to be increased for large corpora.
CP="srl.jar:lib/anna.jar:lib/liblinear-1.51-with-deps.jar:lib/opennlp-tools-1.4.3.jar:lib/maxent-2.5.2.jar:lib/trove.jar:lib/seg.jar"
JVM_ARGS="-cp $CP -Xmx$MEM"


CMD="$JAVA $JVM_ARGS se.lth.cs.srl.CompletePipeline $LANG $NOPI $RERANKER -tagger $POS_MODEL -parser $PARSER_MODEL -srl $SRL_MODEL -test $INPUT -out $OUTPUT"

if [ "$TOKENIZER_MODEL" != "" ]; then
  CMD="$CMD -token $TOKENIZER_MODEL"
fi

if [ "$LEMMATIZER_MODEL" != "" ]; then
  CMD="$CMD -lemma $LEMMATIZER_MODEL"
fi

if [ "$MORPH_MODEL" != "" ]; then
  CMD="$CMD -morph $MORPH_MODEL"
fi

echo "Executing: $CMD"

$CMD