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pymc3 horseshoe prior implementation
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def horseshoe_prior(name, X, y, m, v, s): | |
''' | |
Regularizing horseshoe prior as introduced by Piironen & Vehtari | |
https://arxiv.org/pdf/1707.01694.pdf | |
name: variable name | |
X: X (2-d array) | |
y: y (for setting pseudo-variance) | |
m: expected number of relevant features (must be < total N) | |
v: regularizing student-t df | |
s: regularizing student-t sd | |
''' | |
half_v = v/2 | |
n = X.shape[0] | |
u = np.mean(y) | |
M = X.shape[1] | |
# Estimate binomial psuedo variance using gaussian approximation | |
sigma = np.sqrt(1/u * (1-u)/1) # from https://arxiv.org/pdf/1707.01694.pdf p.15 | |
tau0 = (m/(M-m)) * (sigma/np.math.sqrt(n)) | |
tau_t = pm.HalfCauchy(f"tauT_{name}", beta = 1) | |
tau = tau0*tau_t | |
c2_t = pm.InverseGamma(f"c2_{name}", half_v, half_v) | |
c2 = np.power(s,2) * c2_t | |
lambda_m = pm.HalfCauchy(f"lambdaM_{name}", beta = 1, shape = M) | |
lambda_t = (pm.math.sqrt(c2)*lambda_m) / pm.math.sqrt(c2 + pm.math.sqr(tau) * pm.math.sqr(lambda_m)) | |
beta_t = pm.Normal(f"betaT_{name}", mu=0, sd = 1, shape= M) | |
beta = tau * lambda_t * beta_t | |
return(beta) |
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Hi! I was reading the paper about the regularized horseshoe prior and came upon this gist. I was wondering if you had any idea about the v and s parameters if the priors were defined ? The paper does not seem to point at possible values if I read it correctly.
Thanks!