Created
September 7, 2022 21:06
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Primitive Gibbs sampler, with two demos.
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using Distributions | |
function mysampler(previous::Union{NamedTuple, Nothing})::NamedTuple | |
µ = rand(Normal(3, 2)) | |
σ = rand(TruncatedNormal(1, 3, 0, Inf)) | |
(µ=µ, σ=σ) | |
end | |
function myloglikelihood(θ::NamedTuple)::Float64 | |
obs = [3.45, 7.37, 10.08, 4.33, 3.61, 4.23, 8.35, 5.74, 0.77, 4.28] | |
sum(logpdf.(Normal(θ[:µ], θ[:σ]), obs)) | |
end | |
function mygdemo_sampler(previous::Union{NamedTuple, Nothing})::NamedTuple | |
s² = rand(InverseGamma(2, 3)) | |
m = rand(Normal(0, sqrt(s²))) | |
(s²=s², m=m) | |
end | |
function mygdemo_loglikelihood(θ::NamedTuple)::Float64 | |
x = 1.5 | |
y = 2. | |
sum(logpdf.(Normal(θ[:m], sqrt(θ[:s²])), [x,y])) | |
end | |
function sample(sampler::F, loglikelihood::G; n=1000)::Vector{NamedTuple} where {F<:Function, G<:Function} | |
previous = sampler(nothing) | |
U = Uniform(0, 1) | |
samples = [] | |
i = 1 | |
while i <= n | |
next = sampler(previous) | |
ratio = min(1., exp((loglikelihood(next)-loglikelihood(previous)))) | |
# @show (loglikelihood(next), loglikelihood(previous), ratio) | |
if rand(U) < ratio | |
i += 1 | |
push!(samples, next) | |
previous = next | |
end | |
end | |
samples | |
end | |
# Extract samples using, e.g., µs = [i[:µ] for i in sample(...)] |
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using Turing | |
X = [3.45, 7.37, 10.08, 4.33, 3.61, 4.23, 8.35, 5.74, 0.77, 4.28] | |
@model function gibbs_analog(obs) | |
mu ~ Normal(3, 2) | |
sigma ~ TruncatedNormal(1, 3, 0, Inf) | |
for x in eachindex(obs) | |
obs[x] ~ Normal(mu, sigma) | |
end | |
end | |
@model function gdemo(x, y) | |
s² ~ InverseGamma(2, 3) | |
m ~ Normal(0, sqrt(s²)) | |
x ~ Normal(m, sqrt(s²)) | |
y ~ Normal(m, sqrt(s²)) | |
end |
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