-
-
Save dfd/a7d761f3dada38e35f325ca6f29ac81c to your computer and use it in GitHub Desktop.
Tweedie distribution in Stan
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
data { | |
int N; | |
int M; | |
real<lower=0> Y[N]; | |
} | |
parameters { | |
real<lower=0> mu; | |
real<lower=0> phi; | |
real<lower=1, upper=2> theta; | |
} | |
transformed parameters { | |
real lambda; | |
real alpha; | |
real beta; | |
lambda <- 1/phi*mu^(2-theta)/(2-theta); | |
alpha <- (2-theta)/(theta-1); | |
beta <- 1/phi*mu^(1-theta)/(theta-1); | |
} | |
model { | |
mu ~ cauchy(0, 5); | |
phi ~ cauchy(0, 5); | |
for (n in 1:N) { | |
if (Y[n] == 0) { | |
increment_log_prob(-lambda); | |
} else { | |
vector[M] ps; | |
for (m in 1:M) | |
ps[m] <- poisson_log(m, lambda) + gamma_log(Y[n], m*alpha, beta); | |
increment_log_prob(log_sum_exp(ps)); | |
} | |
} | |
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
library(rstan) | |
library(tweedie) | |
stanmodel <- stan_model(file='model/model.stan') | |
N1 <- 200 | |
M1 <- 30 | |
Y1 <- rtweedie(N1, power=1.3, mu=1, phi=1) | |
data1 <- list(N=N1, M=M1, Y=Y1) | |
fit1 <- sampling(stanmodel, data=data1) | |
N2 <- 1000 | |
M2 <- 30 | |
Y2 <- rtweedie(N2, power=1.01, mu=3, phi=1) | |
data2 <- list(N=N2, M=M2, Y=Y2) | |
fit2 <- sampling(stanmodel, data=data2) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment