Created
May 1, 2018 12:43
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Converting from Networkx to Python-Igraph
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import networkx as nx | |
Gnx = nx.path_graph(4) # Create a random NX graph | |
nx.write_graphml(G,'graph.graphml') # Export NX graph to file | |
import igraph as ig | |
Gix = ig.read('graph.graphml',format="graphml") # Create new IG graph from file |
So stupid. What happens when the graph has millions of nodes, this would take quite a lot of time in that case
@parth-verma thank you for such a nice comment!
In my experience of working with the kind of volume you mention, that's quicker and requires less RAM than other methods I tried. But please feel free to share a better way to do this.
I applied your solution, and it looks like igraph currently do not support GraphML. Please check the below error.
---------------------------------------------------------------------------
NotImplementedError Traceback (most recent call last)
<ipython-input-2-0d19e71fcb45> in <module>
----> 1 G = ig.read('thesaurus_com_syn_graph_maincomponent.graphml',format="graphml")
~\anaconda3\lib\site-packages\igraph\__init__.py in read(filename, *args, **kwds)
4771 @param filename: the name of the file to be loaded
4772 """
-> 4773 return Graph.Read(filename, *args, **kwds)
4774 load=read
4775
~\anaconda3\lib\site-packages\igraph\__init__.py in Read(klass, f, format, *args, **kwds)
2621 raise IOError("no reader method for file format: %s" % str(format))
2622 reader = getattr(klass, reader)
-> 2623 return reader(f, *args, **kwds)
2624 Load = Read
2625
NotImplementedError: Error at c:\users\vssadministrator\appdata\local\temp\pip-req-build-f_aw61lh\vendor\build\igraph\igraph-0.8.3-msvc\src\foreign-graphml.c:1446: GraphML support is disabled, Unimplemented function call
@thepunitsingh igraph lib might have evolved a bit since I published this gist. Check the docs: https://igraph.org/python/doc/igraph.GraphBase-class.html#Read_GraphML
Great! Your solution help me! Thank!
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Most straigt-forward method in my experience: simply write your graph to a file, then read it back.