Created
December 6, 2020 19:09
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Deaths by week
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# Deaths by week | |
options("max.print" = 1e4) | |
library(eurostat) | |
library(data.table) | |
library(ggplot2) | |
library(ISOcodes) | |
cntry <- as.data.table(ISO_3166_1) | |
cntry[, .(geo = Alpha_2, cntry = Name)] | |
# https://ec.europa.eu/eurostat/web/products-datasets/-/demo_r_mwk_ts | |
dat <- get_eurostat(id = "demo_r_mwk_ts") | |
setDT(dat) | |
dat | |
dat[, .N, keyby = .(sex)] | |
dat[, .N, keyby = .(unit)] | |
dat[, .N, keyby = .(geo)] | |
dat[, .N, keyby = .(time)] | |
dat[grepl("W99", time)] | |
dat <- dat[!grepl("W99", time)] | |
dat[, year := as.integer(substr(time, 1, 4))] | |
dat[, week := as.integer(substr(time, 6, 7))] | |
dat[week > 53] | |
dat[week > 52] | |
dat[, .N, keyby = .(year)] | |
dat[, .N, keyby = .(week)] | |
dcast.data.table(data = dat, formula = week ~ year, fun.aggregate = length) | |
dat[, y2020 := year == 2020L] | |
dat[geo == "EL", geo := "GR"] | |
dat[geo == "UK", geo := "GB"] | |
dat2 <- merge(dat, cntry[, .(geo = Alpha_2, cntry = Name)], | |
by = "geo", all.x = T) | |
dat2[is.na(cntry), .N, keyby = .(geo, cntry)] | |
pl <- ggplot(data = dat2[sex == "T" & geo != "AD"], | |
mapping = aes(x = week, y = values, group = year, | |
colour = y2020, alpha = year)) + | |
geom_line() + | |
scale_colour_brewer(palette = "Paired") + | |
facet_wrap(~ cntry, scales = "free_y") + | |
ggtitle("Deaths by week (total)", "Datasource: Eurostat [DEMO_R_MWK_TS]") + | |
theme_bw() | |
ggsave(filename = "dths-by-wk.png", plot = pl, width = 16, height = 9) | |
ggsave(filename = "dths-by-wk.pdf", plot = pl, width = 16, height = 9) |
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Result:
