Java 8 Stack Trace on Protege 4.3

gistfile1.txt

ERROR: Bundle org.protege.common [1] Error starting file:/home/davek/apps/Protege_4.3/bundles/org.protege.common.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.common [1]: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0)))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.common [1]: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
Error:  Could not parse XML contribution for "org.eclipse.equinox.registry//plugin.xml". Any contributed extensions and extension points will be ignored.
ERROR: Bundle org.protege.editor.core.application [7] Error starting file:/home/davek/apps/Protege_4.3/bundles/org.protege.editor.core.application.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.core.application [7]: Unable to resolve 7.0: missing requirement [7.0] osgi.wiring.package; (&(osgi.wiring.package=com.jgoodies.looks)(version>=2.2.1)) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.core.application [7]: Unable to resolve 7.0: missing requirement [7.0] osgi.wiring.package; (&(osgi.wiring.package=com.jgoodies.looks)(version>=2.2.1)) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.protege.owl.rdf [9] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.owl.rdf.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.owl.rdf [9]: Unable to resolve 9.0: missing requirement [9.0] osgi.wiring.package; (&(osgi.wiring.package=javax.imageio)(version>=0.0.0)))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.owl.rdf [9]: Unable to resolve 9.0: missing requirement [9.0] osgi.wiring.package; (&(osgi.wiring.package=javax.imageio)(version>=0.0.0))
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.semanticweb.owl.owlapi [10] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.semanticweb.owl.owlapi.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.semanticweb.owl.owlapi [10]: Unable to resolve 10.0: missing requirement [10.0] osgi.wiring.package; (&(osgi.wiring.package=javax.swing)(version>=0.0.0)))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.semanticweb.owl.owlapi [10]: Unable to resolve 10.0: missing requirement [10.0] osgi.wiring.package; (&(osgi.wiring.package=javax.swing)(version>=0.0.0))
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.protege.owl.diff [11] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.owl.diff.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.owl.diff [11]: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.owl.diff [11]: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.mayo.bmi.semantator [12] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.mayo.bsi.semantator.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.mayo.bmi.semantator [12]: Unable to resolve 12.0: missing requirement [12.0] osgi.wiring.package; (osgi.wiring.package=javax.accessibility))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.mayo.bmi.semantator [12]: Unable to resolve 12.0: missing requirement [12.0] osgi.wiring.package; (osgi.wiring.package=javax.accessibility)
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.protege.editor.owl [13] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.editor.owl.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl [13]: Unable to resolve 13.0: missing requirement [13.0] osgi.wiring.package; (&(osgi.wiring.package=com.clarkparsia.owlapi.explanation)(version>=3.2.4)) [caused by: Unable to resolve 10.0: missing requirement [10.0] osgi.wiring.package; (&(osgi.wiring.package=javax.swing)(version>=0.0.0))])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl [13]: Unable to resolve 13.0: missing requirement [13.0] osgi.wiring.package; (&(osgi.wiring.package=com.clarkparsia.owlapi.explanation)(version>=3.2.4)) [caused by: Unable to resolve 10.0: missing requirement [10.0] osgi.wiring.package; (&(osgi.wiring.package=javax.swing)(version>=0.0.0))]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.protege.editor.owl.codegeneration [14] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.editor.owl.codegeneration.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl.codegeneration [14]: Unable to resolve 14.0: missing requirement [14.0] osgi.wiring.package; (osgi.wiring.package=javax.swing))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl.codegeneration [14]: Unable to resolve 14.0: missing requirement [14.0] osgi.wiring.package; (osgi.wiring.package=javax.swing)
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.coode.dlquery [15] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.coode.dlquery.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.coode.dlquery [15]: Unable to resolve 15.0: missing requirement [15.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.coode.dlquery [15]: Unable to resolve 15.0: missing requirement [15.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle uk.ac.manchester.cs.owl.explanation [16] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.explanation.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle uk.ac.manchester.cs.owl.explanation [16]: Unable to resolve 16.0: missing requirement [16.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))])
org.osgi.framework.BundleException: Unresolved constraint in bundle uk.ac.manchester.cs.owl.explanation [16]: Unable to resolve 16.0: missing requirement [16.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle uk.ac.manchester.cs.owl.factplusplus [17] Error starting file:/home/davek/apps/Protege_4.3/plugins/uk.ac.manchester.cs.owl.factplusplus.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle uk.ac.manchester.cs.owl.factplusplus [17]: Unable to resolve 17.0: missing requirement [17.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))])
org.osgi.framework.BundleException: Unresolved constraint in bundle uk.ac.manchester.cs.owl.factplusplus [17]: Unable to resolve 17.0: missing requirement [17.0] osgi.wiring.package; (osgi.wiring.package=org.apache.log4j) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.coode.owlviz [18] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.coode.owlviz.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.coode.owlviz [18]: Unable to resolve 18.0: missing requirement [18.0] osgi.wiring.package; (osgi.wiring.package=javax.swing))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.coode.owlviz [18]: Unable to resolve 18.0: missing requirement [18.0] osgi.wiring.package; (osgi.wiring.package=javax.swing)
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle ca.uvic.cs.chisel.cajun [19] Error starting file:/home/davek/apps/Protege_4.3/plugins/ca.uvic.cs.chisel.cajun.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle ca.uvic.cs.chisel.cajun [19]: Unable to resolve 19.0: missing requirement [19.0] osgi.wiring.package; (&(osgi.wiring.package=javax.imageio)(version>=0.0.0)))
org.osgi.framework.BundleException: Unresolved constraint in bundle ca.uvic.cs.chisel.cajun [19]: Unable to resolve 19.0: missing requirement [19.0] osgi.wiring.package; (&(osgi.wiring.package=javax.imageio)(version>=0.0.0))
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.protege.editor.owl.rdf [20] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.editor.owl.rdf.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl.rdf [20]: Unable to resolve 20.0: missing requirement [20.0] osgi.wiring.package; (&(osgi.wiring.package=javax.swing)(version>=0.0.0)))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl.rdf [20]: Unable to resolve 20.0: missing requirement [20.0] osgi.wiring.package; (&(osgi.wiring.package=javax.swing)(version>=0.0.0))
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.semanticweb.HermiT [21] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.semanticweb.HermiT.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.semanticweb.HermiT [21]: Unable to resolve 21.0: missing requirement [21.0] osgi.wiring.bundle; (&(osgi.wiring.bundle=org.protege.editor.core.application)(bundle-version>=4.1.0)) [caused by: Unable to resolve 7.0: missing requirement [7.0] osgi.wiring.package; (&(osgi.wiring.package=com.jgoodies.looks)(version>=2.2.1)) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))]])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.semanticweb.HermiT [21]: Unable to resolve 21.0: missing requirement [21.0] osgi.wiring.bundle; (&(osgi.wiring.bundle=org.protege.editor.core.application)(bundle-version>=4.1.0)) [caused by: Unable to resolve 7.0: missing requirement [7.0] osgi.wiring.package; (&(osgi.wiring.package=com.jgoodies.looks)(version>=2.2.1)) [caused by: Unable to resolve 1.0: missing requirement [1.0] osgi.wiring.package; (&(osgi.wiring.package=org.w3c.dom)(version>=0.0.0))]]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.protege.ontograf [22] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.ontograf.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.ontograf [22]: Unable to resolve 22.0: missing requirement [22.0] osgi.wiring.package; (osgi.wiring.package=javax.imageio))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.ontograf [22]: Unable to resolve 22.0: missing requirement [22.0] osgi.wiring.package; (osgi.wiring.package=javax.imageio)
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.protege.editor.owl.diff [23] Error starting file:/home/davek/apps/Protege_4.3/plugins/org.protege.editor.owl.diff.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl.diff [23]: Unable to resolve 23.0: missing requirement [23.0] osgi.wiring.package; (osgi.wiring.package=javax.swing))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.protege.editor.owl.diff [23]: Unable to resolve 23.0: missing requirement [23.0] osgi.wiring.package; (osgi.wiring.package=javax.swing)
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3818)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:1868)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
	at java.lang.Thread.run(Thread.java:744)

thanks. worked like a charm!

Hi,
I am running into a similar issue while trying to run Protégé 5.2.1 on my mac.
I'm using Eclipse Version: Oxygen.2 Release (4.7.2)
I followed this guide https://github.com/protegeproject/protege/wiki/Setup-in-Eclipse
I would like to ask if anybody successfully used this solution on protege 5.x or if this is specific to 4.3
If yes, into which protégé bin directory should the felix.jar be copied into?
Your help is geartly appreciated!

Thanks, I resolved by replacing the felix.jar.
you can download from here only felix.jar.
https://github.com/Adiii717/protege_docker/blob/master/felix.jar

Hi,

I just had the problem. You have to download the latest version of the Felix Framework (http://felix.apache.org/). Once done, put the felix.jar in the "bin" directory of Protégé.

Instead of replacing the old felix.jar, I suggest you to rename it, like felix.jar.bak for example, just in case.

Thanks @YaVon you saved my day!

It worked very well for me. Thank you. 06/20/2020

Awesome! You are a life saver, Thanks.

Wonderful, this solved my problem. Thanks

Thanks, I resolved by replacing the felix.jar. you can download from here only felix.jar. https://github.com/Adiii717/protege_docker/blob/master/felix.jar

Cheers Mate!

Thanks @YaVon :) It worked for me!