dleehr · December 8, 2016 20:47
diff --git a/merge-secondary-files.cwl b/merge-secondary-files.cwl
 #!/usr/bin/env cwl-runner

 cwlVersion: v1.0
 class: ExpressionTool
 requirements:
  - class: InlineJavascriptRequirement

 inputs:
  primary:
    type: File
  secondary:
    type:
      type: array
      items: File
 outputs:
  merged:
    type: File

 expression: >
  ${
    var ret = inputs.primary;
    ret["secondaryFiles"] = inputs.secondary;
    return {"merged": ret };
  }
diff --git a/merge.json b/merge.json
 {"primary":{"class":"File","path":"primary"},"secondary":[{"class":"File","path":"secondary"}]}
diff --git a/primary b/primary
 Primary File
diff --git a/secondary b/secondary
 Secondary File
	#!/usr/bin/env cwl-runner

	cwlVersion: v1.0
	class: ExpressionTool
	requirements:
	- class: InlineJavascriptRequirement

	inputs:
	primary:
	type: File
	secondary:
	type:
	type: array
	items: File
	outputs:
	merged:
	type: File

	expression: >
	${
	var ret = inputs.primary;
	ret["secondaryFiles"] = inputs.secondary;
	return {"merged": ret };
	}